bitrugs: Bayesian Inference of Transmission Routes Using Genome Sequences

MCMC methods to estimate transmission dynamics and infection routes in hospitals using genomic sampling data.

AuthorColin Worby
Date of publication2016-05-24 23:30:13
MaintainerColin Worby <cworby@hsph.harvard.edu>
LicenseGPL-3
Version0.1

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Files

bitrugs
bitrugs/src
bitrugs/src/wgs_mcmc.c
bitrugs/src/wgsmcmc_head.h
bitrugs/src/wgs_functions.c
bitrugs/NAMESPACE
bitrugs/data
bitrugs/data/hospitaldata.rda
bitrugs/data/mcmcoutput.rda
bitrugs/R
bitrugs/R/networkplots.r
bitrugs/R/transmissionanalysis.r
bitrugs/R/simulatedata.r
bitrugs/MD5
bitrugs/DESCRIPTION
bitrugs/man
bitrugs/man/plot_transnetwork.Rd bitrugs/man/bitrugs-package.Rd bitrugs/man/traceplots.Rd bitrugs/man/simulate_data.Rd bitrugs/man/hospitaldata.Rd bitrugs/man/bitrugs-internal.Rd bitrugs/man/transmission_analysis.Rd bitrugs/man/simulate_data_dates.Rd bitrugs/man/translinks.Rd bitrugs/man/mcmcoutput.Rd

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