bkmr: Bayesian Kernel Machine Regression
Version 0.2.0

Implementation of a statistical approach for estimating the joint health effects of multiple concurrent exposures.

Browse man pages Browse package API and functions Browse package files

AuthorJennifer F. Bobb [aut, cre]
Date of publication2017-03-24 19:03:01 UTC
MaintainerJennifer F. Bobb <jenniferfederbobb@gmail.com>
LicenseGPL-2
Version0.2.0
URL https://github.com/jenfb/bkmr
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("bkmr")

Man pages

CalcGroupPIPs: Calculate group-specific posterior inclusion probabilities
CalcPIPs: Calculate variable-specific posterior inclusion probabilities
CalcWithinGroupPIPs: Calculate conditional predictor specific posterior inclusion...
ComputePostmeanHnew: Compute the posterior mean and variance of 'h' at a new...
ComputePostmeanHnew.approx: Compute the posterior mean and variance of 'h' at a new...
ComputePostmeanHnew.exact: Compute the posterior mean and variance of 'h' at a new...
ExtractEsts: Extract summary statistics
ExtractPIPs: Extract posterior inclusion probabilities (PIPs) from BKMR...
ExtractSamps: Extract samples
InvestigatePrior: Investigate prior
kmbayes: Fit Bayesian kernel machine regression
OverallRiskSummaries: Calculate overall risk summaries
PlotPriorFits: Plot of exposure-response function from univariate KMR fot
PredictorResponseBivar: Predict the exposure-response function at a new grid of...
PredictorResponseBivarLevels: Plot cross-sections of the bivariate predictor-response...
PredictorResponseUnivar: Plot univariate predictor-response function on a new grid of...
print.bkmrfit: Print basic summary of BKMR model fit
SamplePred: Obtain posterior samples of predictions at new points
set_verbose_opts: Options for printing summary of model fit to the console
SimData: Simulate dataset
SingVarIntSummaries: Single Variable Interaction Summaries
SingVarRiskSummaries: Single Variable Risk Summaries
summary.bkmrfit: Summarizing BKMR model fits
SummarySamps: Compute summary statistics
TracePlot: Trace plot

Functions

CalcGroupPIPs Man page Source code
CalcPIPs Man page Source code
CalcR2 Source code
CalcWithinGroupPIPs Man page Source code
ComputePostmeanHnew Man page Source code
ComputePostmeanHnew.approx Man page Source code
ComputePostmeanHnew.exact Man page Source code
ExtractEsts Man page Source code
ExtractPIPs Man page Source code
ExtractSamps Man page Source code
HFun1 Source code
HFun2 Source code
HFun3 Source code
InvestigatePrior Man page Source code
MHstep Source code
OverallRiskSummaries Man page Source code
PlotPriorFits Man page Source code
PredictorResponseBivar Man page Source code
PredictorResponseBivarLevels Man page Source code
PredictorResponseBivarPair Source code
PredictorResponseUnivar Man page Source code
PredictorResponseUnivarVar Source code
SamplePred Man page Source code
SimData Man page Source code
SingVarIntSummaries Man page Source code
SingVarIntSummary Source code
SingVarRiskSummaries Man page Source code
SummarySamps Man page Source code
TracePlot Man page Source code
VarRiskSummary Source code
beta.update Source code
h.update Source code
interactionSummary.approx Source code
interactionSummary.samp Source code
kmbayes Man page Source code
lambda.update Source code
makeKpart Source code
makeVcomps Source code
make_r_params_comp Source code
newh.postmean Source code
newh.update Source code
onAttach Source code
predz.samps Source code
print.bkmrfit Man page Source code
print_diagnostics Source code
r.update Source code
rdelta.comp.update Source code
rdelta.group.update Source code
release_questions Source code
riskSummary.approx Source code
riskSummary.samp Source code
set.r.MH.functions Source code
set.r.params Source code
set_verbose_opts Man page Source code
sigsq.eps.update Source code
summary.bkmrfit Man page Source code
validateControlParams Source code Source code Source code
validateStartingParams Source code
validateStartingValues Source code
ystar.update Source code
ystar.update.noh Source code

Files

NAMESPACE
NEWS.md
R
R/PredictorResponseFunctions.R
R/TracePlot.R
R/base.r
R/CalcR2.R
R/argval_ListInput.R
R/bkmr_r_parameter_helper_functions.R
R/ExtractEsts.R
R/bkmr_parameter_update_functions.R
R/print_verbose.R
R/SimData.R
R/ComputePostmeanHnew.R
R/SamplePred.R
R/ComputeMixtureSummaries.R
R/argval_controlParams.R
R/bkmr_main_functions.R
R/InvestigatePrior_rm.R
R/CalcPIPs.R
R/argval_ParamInput.R
R/zzz.R
README.md
MD5
DESCRIPTION
man
man/PlotPriorFits.Rd
man/SingVarRiskSummaries.Rd
man/SimData.Rd
man/kmbayes.Rd
man/PredictorResponseBivarLevels.Rd
man/CalcGroupPIPs.Rd
man/summary.bkmrfit.Rd
man/InvestigatePrior.Rd
man/ComputePostmeanHnew.approx.Rd
man/SamplePred.Rd
man/SingVarIntSummaries.Rd
man/ExtractPIPs.Rd
man/CalcWithinGroupPIPs.Rd
man/ComputePostmeanHnew.Rd
man/ExtractEsts.Rd
man/CalcPIPs.Rd
man/PredictorResponseUnivar.Rd
man/PredictorResponseBivar.Rd
man/ComputePostmeanHnew.exact.Rd
man/ExtractSamps.Rd
man/SummarySamps.Rd
man/TracePlot.Rd
man/print.bkmrfit.Rd
man/OverallRiskSummaries.Rd
man/set_verbose_opts.Rd
bkmr documentation built on May 19, 2017, 6:06 p.m.