Files in blaster

Native R Implementation of an Efficient BLAST-Like Algorithm

MD5

README.md

NAMESPACE

DESCRIPTION

LICENSE

R/RcppExports.R R/blaster.R R/blaster-package.R

src/SequenceWriter.h

src/Sequence.h

src/SequenceReader.h

src/RcppExports.cpp

src/Common.h

src/Alphabet.h

src/TextReader.cpp

src/ReadFasta.cpp

src/Utils.h

src/WorkerQueue.h

src/Search.h

src/TextReader.h

src/Database.h

src/blast.cpp

src/FileFormat.h

src/Database/HSP.h

src/Database/Search.h

src/Database/GlobalSearch.h

src/Database/Highscore.h

src/Database/Kmers.h

src/Database/HitWriter.h

src/FASTQ/QScore.h

src/FASTQ/Writer.h

src/FASTQ/Reader.h

src/Alignment/Common.h

src/Alignment/BandedAlign.h

src/Alignment/ExtendAlign.h

src/Alignment/SegmentPair.h

src/Alignment/Cigar.h

src/Alphabet/DNA.h

src/Alphabet/Protein.h

src/PairedEnd/Merger.h

src/PairedEnd/Reader.h

src/CSV/Writer.h

src/FASTA/Writer.h

src/FASTA/Reader.h

src/Alnout/Writer.h

inst/extdata/query.fasta

inst/extdata/prot.fasta

inst/extdata/db.fasta

build/partial.rdb

man/read_fasta.Rd man/blast.Rd man/blaster-package.Rd

blaster documentation built on Aug. 22, 2023, 5:06 p.m.