Man pages for blisa
Infer Cell-Cell Communication from Spatial Transcriptomics
| blisa | Run BLISA spatial cell-cell communication analysis |
| blisa-package | blisa: Bivariate Local Indicator of Spatial Association for... |
| blisaPathway | Aggregate BLISA hotspots to the pathway level |
| computeSpatialWeights | Compute Spatial Weights for BLISA |
| filterLRpairs | Filter ligand-receptor pairs by expression threshold |
| hexBinCells | Bin cells into hexagonal spatial bins |
| is.blisa | Test if an object is a blisa object |
| new_blisa | Create a blisa object |
| plotCCI | Heatmap of CCI scores across all ligand-receptor pairs |
| plotCCILR | Sender-by-receiver heatmap of CCI scores for one... |
| plotCCIspatial | Spatial map of dominant sender-receiver cell-type pairs at... |
| plotCCIsummary | Sender-by-receiver heatmap of aggregated CCI scores across LR... |
| plotHotspots | Spatial hotspot map for one ligand-receptor pair |
| plotLRrank | Dot plot ranking LR pairs by number of significant hotspot... |
| runCCI | Score cell-cell interactions from BLISA hotspots |
| visiumSpotBins | Build spot-level hexagonal bins from a Visium... |
