Implements fast, exact bootstrap Principal Component Analysis and Singular Value Decompositions for high dimensional data, as described in <http://arxiv.org/abs/1405.0922>. For data matrices that are too large to operate on in memory, users can input objects with class 'ff' (see the 'ff' package), where the actual data is stored on disk. In response, this package will implement a block matrix algebra procedure for calculating the principal components (PCs) and bootstrap PCs. Depending on options set by the user, the 'parallel' package can be used to parallelize the calculation of the bootstrap PCs.

Author | Aaron Fisher <fisher@jhu.edu> |

Date of publication | 2015-06-02 00:22:54 |

Maintainer | Aaron Fisher <fisher@jhu.edu> |

License | GPL-2 |

Version | 0.5 |

http://arxiv.org/abs/1405.0922 |

**As2Vs:** Convert low dimensional bootstrap components to high...

**bootPCA:** Quickly calculates bootstrap PCA results (wrapper for...

**bootSVD:** Calculates bootstrap distribution of PCA (i.e. SVD) results

**bootSVD_LD:** Calculate bootstrap distribution of n-dimensional PCs

**EEG_leadingV:** Leading 5 Principal Components (PCs) from EEG dataset

**EEG_mu:** Functional mean from EEG dataset

**EEG_score_var:** Empirical variance of the first 5 score variables from EEG...

**fastSVD:** Fast SVD of a wide or tall matrix

**ffmatrixmult:** Matrix multiplication with "ff_matrix" or "matrix" inputs

**genBootIndeces:** Generate a random set of bootstrap resampling indeces

**genQ:** Generate random orthonormal matrix

**getMomentsAndMomentCI:** Calculate bootstrap moments and moment-based confidence...

**os:** Quickly print an R object's size

**qrSVD:** Wrapper for 'svd', which uses random preconditioning to...

**reindexMatricesByK:** Used for calculation of low dimensional standard errors &...

**reindexVectorsByK:** Used to study of the bootstrap distribution of the k^th...

**simEEG:** Simulation functional EEG data

As2Vs | Man page |

bootPCA | Man page |

bootSVD | Man page |

bootSVD_LD | Man page |

EEG_leadingV | Man page |

EEG_mu | Man page |

EEG_score_var | Man page |

fastSVD | Man page |

ffmatrixmult | Man page |

genBootIndeces | Man page |

genQ | Man page |

getMomentsAndMomentCI | Man page |

os | Man page |

qrSVD | Man page |

reindexMatricesByK | Man page |

reindexVectorsByK | Man page |

simEEG | Man page |

bootSVD

bootSVD/NAMESPACE

bootSVD/data

bootSVD/data/EEG_PCA.rda

bootSVD/R

bootSVD/R/bootstrap_functions.R
bootSVD/README.md

bootSVD/MD5

bootSVD/DESCRIPTION

bootSVD/man

bootSVD/man/getMomentsAndMomentCI.Rd
bootSVD/man/EEG_leadingV.Rd
bootSVD/man/bootSVD.Rd
bootSVD/man/EEG_score_var.Rd
bootSVD/man/As2Vs.Rd
bootSVD/man/reindexMatricesByK.Rd
bootSVD/man/genQ.Rd
bootSVD/man/fastSVD.Rd
bootSVD/man/ffmatrixmult.Rd
bootSVD/man/qrSVD.Rd
bootSVD/man/os.Rd
bootSVD/man/bootPCA.Rd
bootSVD/man/simEEG.Rd
bootSVD/man/genBootIndeces.Rd
bootSVD/man/bootSVD_LD.Rd
bootSVD/man/EEG_mu.Rd
bootSVD/man/reindexVectorsByK.Rd
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