plot.netSimulator: netSimulator S3 methods

In bootnet: Bootstrap Methods for Various Network Estimation Routines

netSimulator S3 methods

Description

Plot, print and summary methods for netSimulator output.

Usage

## S3 method for class 'netSimulator'
plot(x, xvar = "factor(nCases)", yvar = c("sensitivity",
                 "specificity", "correlation"), xfacet = "measure",
                 yfacet = ".", color = NULL, ylim = c(0, 1), print =
                 TRUE, xlab = "Number of cases", ylab, outlier.size =
                 0.5, boxplot.lwd = 0.5, style = c("fancy", "basic"),
                 ...)
## S3 method for class 'netSimulator'
print(x, digits = 2, ...)
## S3 method for class 'netSimulator'
summary(object, digits = 2, ...)

## S3 method for class 'replicationSimulator'
plot(x, yvar = c("correlation", "jaccard",
                 "replicatedEdges", "replicatedZeroes"), ...)
## S3 method for class 'replicationSimulator'
print(x, digits = 2, ...)
## S3 method for class 'replicationSimulator'
summary(object, digits = 2, ...)

Arguments

x	Output of netSimulator.
object	Output of netSimulator.
xvar	String indicating the variable to be used on the x-axis.
yvar	String vector indicating the variable(s) to be used on the y-axis.
xfacet	String indicating the variable to be used on the horizontal facets (or "." to omit).
yfacet	String indicating the variable to be used on the vertical facets (or "." to omit).
color	String indicating the variable to be used in coloring boxplots.
ylim	Y-axis limits.
print	Logical, should the plot be printed? This helps printing the plots to PDF files.
digits	Number of digits to be used in print and summary method.
xlab	X-axis label
ylab	Y-axis label. Defaults to combining the values in yvar. Is hidden when xfacet = "measure", as then it is clear what the y-axis represent from the facet labels.
outlier.size	Size of the outliers as plotted in boxplots.
boxplot.lwd	Line width of the boxplots
style	"fance" for a style including several aesthethic enhancements, and "basic" for a as simple as possible style.
...	Arguments sent to "plot.netSimulator" from "plot.replicationSimulator"

Author(s)

Sacha Epskamp <[e-mail]>

bootnet documentation built on May 29, 2024, 8:38 a.m.