clean: Clean SNP Matrix
In bravo: Bayesian Screening and Variable Selection
View source: R/calc_functions.R
clean R Documentation
Clean SNP Matrix
Description
Removes duplicate SNPs and filters low MAF variants.
Usage
clean(SNPmat, MAF_threshold = 0.05)
Arguments
SNPmat
A sparse SNP matrix (dgCMatrix).
MAF_threshold
Minor Allele Frequency cutoff (default 0.05).
bravo documentation built on May 27, 2026, 5:08 p.m.
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View source: R/calc_functions.R
| clean | R Documentation |
Clean SNP Matrix
Description
Removes duplicate SNPs and filters low MAF variants.
Usage
clean(SNPmat, MAF_threshold = 0.05)
Arguments
SNPmat |
A sparse SNP matrix (dgCMatrix). |
MAF_threshold |
Minor Allele Frequency cutoff (default 0.05). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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