svenetics_pipeline: Full Multi-Trait GWAS Pipeline
In bravo: Bayesian Screening and Variable Selection

svenetics_pipeline

R Documentation

Full Multi-Trait GWAS Pipeline

Description

Runs GWAS across all traits and saves results as CSVs.

Usage

svenetics_pipeline(
  svenetics_trained_object,
  traitfile,
  hitsizes = NULL,
  save_dir = "~/SVENETICS_RESULTS"
)

Arguments

`svenetics_trained_object`	A trained svenetics object from parameter_selection().
`traitfile`	Data frame with sample IDs in column 1 and traits in remaining columns.
`hitsizes`	Character vector of hit sizes per trait, or NULL for "medium" across all.
`save_dir`	Directory path where results will be saved (default "~/SVENETICS_RESULTS").

Value

Saves the selected SNPs and their MIPs for each trait as separate CSV files in the specified directory. Also returns a list of data frames with the results for each trait.

bravo documentation built on June 9, 2026, 9:06 a.m.