Files in breakaway
Species Richness Estimation and Modeling

MD5
README.md
NAMESPACE
DESCRIPTION
R/alpha_sample.R R/tools_covariate_matrix.R R/F_test.R R/plot_betta.R R/utils-pipe.R R/richness_sample.R R/richness_poisson.R R/tools_simulate.R R/richness_wlrm_ut.R R/tools_build.R R/richness_chao1_bc.R R/simulate_betta_random.R R/alpha_true.R R/get_F_stat.R R/model_betta_random.R R/tools_cutoff_wrap.R R/richness_wlrm_t.R R/class_alpha_estimate.R R/class_alpha_estimates.R R/richness_breakaway.R R/tools_sample_size.R R/tools_convert.R R/simulate_betta.R R/richness_objective_bayes.R R/shannon_chao_shen.R R/bData.R R/betta_lincom.R R/plot_alpha_estimates.R R/test_submodel.R R/model_betta.R R/richness_poisson_nof1.R R/richness_good_turing.R R/richness_breakaway_nof1.R R/physeq_wrap.R R/richness_kemp.R R/richness_chao_bunge.R R/richness_chao1.R R/tools_breakaway.R inst/doc/diversity-hypothesis-testing.R
inst/doc/intro-diversity-estimation.html
inst/doc/diversity-hypothesis-testing.html
inst/doc/breakaway.html
inst/doc/breakaway.Rmd inst/doc/intro-diversity-estimation.Rmd inst/doc/diversity-hypothesis-testing.Rmd inst/doc/intro-diversity-estimation.R inst/doc/breakaway.R
build/vignette.rds
build/partial.rdb
tests/testthat.R tests/testthat/test-samplesize.R tests/testthat/test-q2.R tests/testthat/test-alpha_estimates.R tests/testthat/test-breakaway-reasonable.R tests/testthat/test-betta.R tests/testthat/test-s3.R tests/testthat/test-datasets-run.R tests/testthat/known-to-dos.R tests/testthat/test-objective_bayes.R tests/testthat/test-vignettes.R tests/testthat/objective-bayes.R tests/testthat/helper-data.R tests/testthat/test-alpha_true.R tests/testthat/test-pathological.R tests/testthat/test-all-estimates.R tests/testthat/test-poisson.R tests/testthat/test-tools_build.R tests/testthat/test-simulate.R tests/testthat/test-input-conversions.R tests/testthat/test-sampling.R tests/testthat/test-designmatrix.R tests/testthat/test-parametric_bootstrap.R tests/testthat/test-shannon.R tests/testthat/test-nof1.R tests/testthat/test-legacy.R tests/testthat/test-breakaway.R
vignettes/diversity-hypothesis-testing.html.asis
vignettes/intro-diversity-estimation.html.asis
vignettes/breakaway.Rmd vignettes/intro-diversity-estimation.Rmd vignettes/diversity-hypothesis-testing.Rmd
vignettes/breakaway.html.asis
data/pasolli_et_al.rda
data/toy_metadata.rda
data/toy_taxonomy.rda
data/toy_otu_table.rda
data/apples.rda
data/hawaii.rda
data/soil_phylo.rda
man/rnbinomtable.Rd man/alpha_estimates.Rd man/true_inverse_simpson.Rd man/objective_bayes_mixedgeo.Rd man/chao_bunge.Rd man/objective_bayes_geometric.Rd man/betta_pic.Rd man/alpha_estimate.Rd man/betta_lincom.Rd man/poisson_model.Rd man/soil_phylo.Rd man/objective_bayes_poisson.Rd man/breakaway_nof1.Rd man/plot.alpha_estimates.Rd man/chao_shen.Rd man/physeq_wrap.Rd man/simulate_betta_random.Rd man/make_frequency_count_table.Rd man/toy_otu_table.Rd man/apples.Rd man/sample_shannon_e.Rd man/make_design_matrix.Rd man/F_test.Rd man/betta.Rd man/cutoff_wrap.Rd man/objective_bayes_negbin.Rd man/true_hill.Rd man/sample_richness.Rd man/rztnbinomtable.Rd man/sample_simpson.Rd man/good_turing.Rd man/true_shannon.Rd man/convert.Rd man/simulate_betta.Rd man/get_F_stat.Rd man/build_frequency_count_tables.Rd man/chao1.Rd man/sample_shannon.Rd man/pipe.Rd man/toy_metadata.Rd man/check_format.Rd man/wlrm_transformed.Rd man/kemp.Rd man/true_gini.Rd man/true_shannon_e.Rd man/sample_size_estimate.Rd man/betta_random.Rd man/pasolli_et_al.Rd man/toy_taxonomy.Rd man/true_simpson.Rd man/test_submodel.Rd man/poisson_model_nof1.Rd man/wlrm_untransformed.Rd man/sample_inverse_simpson.Rd man/hawaii.Rd man/chao1_bc.Rd man/proportions_instead.Rd man/sample_size_figure.Rd man/breakaway.Rd
man/figures/logo.png
breakaway documentation built on Nov. 22, 2022, 5:08 p.m.