Man pages for bridger2
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
| BridgeRCore | BridgeR basic function for calculating RNA half-life from... |
| BridgeRDatasetChecker | BRIC-seq Dataset checker |
| BridgeRDataSetFromMatrix | Calculate relative RPKM expression from data.table format. |
| BridgeRDataSetFromRaw | Calculate relative RPKM expression from raw data. |
| BridgeReport | Shinyapp reporting for drawing RNA decay curve. |
| BridgeRGrubbsTest | RNA half-life Grubbs test. |
| BridgeRHalfLifeCalc3models | Calculate RNA half-life for each gene using 3model method. |
| BridgeRHalfLifeCalcR2Select | Calculate RNA half-life for each gene using R2 selection... |
| BridgeRNormalization | Calculate the normalized RPKM for BRIC-seq dataset. |
| BridgeRNormalizationFactors | Calculate normalization factors for BRIC-seq datasets. |
| BridgeRNormalizationFactorsHK | Calculate normalization factors from house-keeping genes. |
| BridgeRPvalueEvaluation | Calculate Fold-change of RNA half-life and p-value. |
| BridgeRResultChecker | BRIC-seq result checker |
| CalcHalflifeDeviation | Calculate RNA half-life SD. |
| halflife_table | BRIC-seq result dataset for p-value estimation using grubbs... |
| RNA_halflife_comparison | test BRIC-seq dataset for RNA half-life comparison |
| RNA_halflife_comparison_HK | test BRIC-seq dataset for RNA half-life comparison using... |
| RNA_halflife_grubbs_test | test BRIC-seq dataset for p-value estimation using grubbs... |
