halflife_table: BRIC-seq result dataset for p-value estimation using grubbs...
In bridger2: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Description
A dataset containing the RPKM for each time point, information column,
RNA half-life, R2 and fitting model about 200 genes.
The variables are as follows:
Usage
1
Format
A data frame with 200 rows and 52 variables:
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_1
RPKM value at 0h in control condition
- T01_1
RPKM value at 1h in control condition
- T02_1
RPKM value at 2h in control condition
- T04_1
RPKM value at 4h in control condition
- T08_1
RPKM value at 8h in control condition
- T12_1
RPKM value at 12h in control condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_2
RPKM value at 0h in control condition
- T01_2
RPKM value at 1h in control condition
- T02_2
RPKM value at 2h in control condition
- T04_2
RPKM value at 4h in control condition
- T08_2
RPKM value at 8h in control condition
- T12_2
RPKM value at 12h in control condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_3
RPKM value at 0h in control condition
- T01_3
RPKM value at 1h in control condition
- T02_3
RPKM value at 2h in control condition
- T04_3
RPKM value at 4h in control condition
- T08_3
RPKM value at 8h in control condition
- T12_3
RPKM value at 12h in control condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_4
RPKM value at 0h in knockdown condition
- T01_4
RPKM value at 1h in knockdown condition
- T02_4
RPKM value at 2h in knockdown condition
- T04_4
RPKM value at 4h in knockdown condition
- T08_4
RPKM value at 8h in knockdown condition
- T12_4
RPKM value at 12h in knockdown condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
bridger2 documentation built on May 2, 2019, 8:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
A dataset containing the RPKM for each time point, information column, RNA half-life, R2 and fitting model about 200 genes. The variables are as follows:
Usage
1 |
Format
A data frame with 200 rows and 52 variables:
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_1
RPKM value at 0h in control condition
- T01_1
RPKM value at 1h in control condition
- T02_1
RPKM value at 2h in control condition
- T04_1
RPKM value at 4h in control condition
- T08_1
RPKM value at 8h in control condition
- T12_1
RPKM value at 12h in control condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_2
RPKM value at 0h in control condition
- T01_2
RPKM value at 1h in control condition
- T02_2
RPKM value at 2h in control condition
- T04_2
RPKM value at 4h in control condition
- T08_2
RPKM value at 8h in control condition
- T12_2
RPKM value at 12h in control condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_3
RPKM value at 0h in control condition
- T01_3
RPKM value at 1h in control condition
- T02_3
RPKM value at 2h in control condition
- T04_3
RPKM value at 4h in control condition
- T08_3
RPKM value at 8h in control condition
- T12_3
RPKM value at 12h in control condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
- gr_id
Group id
- symbol
Gene symbol
- accession_id
Gene accession id (RefSeq)
- locus
Genome locus
- T00_4
RPKM value at 0h in knockdown condition
- T01_4
RPKM value at 1h in knockdown condition
- T02_4
RPKM value at 2h in knockdown condition
- T04_4
RPKM value at 4h in knockdown condition
- T08_4
RPKM value at 8h in knockdown condition
- T12_4
RPKM value at 12h in knockdown condition
- Model
RNA decay fitting model
- R2
R2 for fitting curve
- half_life
RNA half-life
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.