RNA_halflife_comparison_HK: test BRIC-seq dataset for RNA half-life comparison using...

In bridger2: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data

Description

A dataset containing the RPKM for each time point and information column about 200 genes + house-keeping genes. The variables are as follows:

Usage

RNA_halflife_comparison_HK

Format

A data frame with 200 rows and 20 variables:

gr_id

Group id

symbol

Gene symbol

accession_id

Gene accession id (RefSeq)

locus

Genome locus

CTRL_1_0h

RPKM value at 0h in control condition

CTRL_1_1h

RPKM value at 1h in control condition

CTRL_1_2h

RPKM value at 2h in control condition

CTRL_1_4h

RPKM value at 4h in control condition

CTRL_1_8h

RPKM value at 8h in control condition

CTRL_1_12h

RPKM value at 12h in control condition

gr_id

Group id

symbol

Gene symbol

accession_id

Gene accession id (RefSeq)

locus

Genome locus

KD_1_0h

RPKM value at 0h in knockdown condition

KD_1_1h

RPKM value at 1h in knockdown condition

KD_1_2h

RPKM value at 2h in knockdown condition

KD_1_4h

RPKM value at 4h in knockdown condition

KD_1_8h

RPKM value at 8h in knockdown condition

KD_1_12h

RPKM value at 12h in knockdown condition

bridger2 documentation built on May 2, 2019, 8:14 a.m.