c060: Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models

c060 provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models

Author
Martin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker.
Date of publication
2014-12-11 17:04:36
Maintainer
Martin Sill <m.sill@dkfz.de>
License
GPL-2
Version
0.2-4

View on CRAN

Man pages

aggregation.auc
Determine the area under the ROC curve for a fitted model
balancedFolds
Function producing stratified/ balanced folds for cross...
coef.intsearch
Get coefficients for a model
complexity.glmnet
Interface for determination of penalty lambda in penalized...
EPSGO
Efficient Parameter Selection via Global Optimization
fit.glmnet
Interface function for fitting a penalized regression model...
PLL.coxnet
Predictive partial log-likelihood for glmnet Cox PH model fit
Plot.coef.glmnet
function to highlight the path of a pre-specified set of...
Plot.peperr.curves
Plot method for prediction error curves of a peperr object
plot.stabpath
function to plot a stability path
plot.summary.int
Plot Summary object for interval search models
predictProb.coxnet
Extract predicted survival probabilities from a glmnet fit
predictProb.glmnet
Extract predicted survival probabilities from a glmnet fit
stabpath
Stability path for glmnet models
stabsel
function to estimate a stable set of variables
summary.intsearch
Summary method for interval search models
tune.glmnet.interval
Wrapper function for 'glmnet' objects.

Files in this package

c060
c060/inst
c060/inst/CITATION
c060/inst/doc
c060/inst/doc/c060_vignette_nojss.pdf
c060/NAMESPACE
c060/R
c060/R/EPSGO.R
c060/R/stabilityselection.R
c060/R/tune_glmnet_interval.R
c060/R/summary_inter_search.R
c060/R/peperr_glmnet.R
c060/R/balancedFolds.R
c060/R/coef_intsearch.R
c060/R/plot_summary_inter_search.R
c060/R/plot_coef_glmnet.R
c060/MD5
c060/DESCRIPTION
c060/man
c060/man/EPSGO.Rd
c060/man/stabsel.Rd
c060/man/coef.intsearch.Rd
c060/man/balancedFolds.Rd
c060/man/PLL.coxnet.Rd
c060/man/Plot.coef.glmnet.Rd
c060/man/plot.summary.int.Rd
c060/man/complexity.glmnet.Rd
c060/man/stabpath.Rd
c060/man/Plot.peperr.curves.Rd
c060/man/tune.glmnet.interval.Rd
c060/man/summary.intsearch.Rd
c060/man/predictProb.coxnet.Rd
c060/man/plot.stabpath.Rd
c060/man/fit.glmnet.Rd
c060/man/aggregation.auc.Rd
c060/man/predictProb.glmnet.Rd