biod_results: Output from Biodiverse
In canaper: Categorical Analysis of Neo- And Paleo-Endemism

biod_results

R Documentation

Output from Biodiverse

Description

Output of analyzing test data with Biodiverse.

Usage

biod_results

Format

A tibble (dataframe) with 127 rows and 7 columns. Columns include:

site: Site name; corresponds to row names of biod_example$comm
pd_biodiv: Phylogenetic diversity (PD; PD_P in Biodiverse)
pd_alt_biodiv: Alternative PD (PD measured on tree with all branchlengths equal; PHYLO_RPD_NULL2 in Biodiverse)
rpd_biodiv: Relative PD (PD divided by alternative PD; PHYLO_RPD_NULL2 in Biodiverse)
pe_biodiv: Phylogenetic endemism (PE; PE_WE_P in Biodiverse)
pe_alt_biodiv: Alternative PE (PE measured on tree with all branchlengths equal; PHYLO_RPE_NULL2 in Biodiverse)
rpe_biodiv: Relative PE (PE divided by alternative PD; PHYLO_RPE2 in Biodiverse)

Details

The example_project.bps # nolint example data set was used as input,which corresponds to the biod_example dataset in this package.

For a description of all Biodiverse metrics, see the Biodiverse wiki. # nolint

References

Laffan, S.W., Lubarsky, E. & Rosauer, D.F. (2010) Biodiverse, a tool for the spatial analysis of biological and related diversity. Ecography. Vol 33, 643-647 (Version 3.1). \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1111/j.1600-0587.2010.06237.x")}