phylocom: Phylocom example data

In canaper: Categorical Analysis of Neo- And Paleo-Endemism

Phylocom example data

Description

Fictional data for testing purposes from Phylocom (Webb et al. 2008)

Usage

phylocom

Format

A list with three elements:

phylo

Phylogeny with 32 tips

sample

Community matrix with 6 sites (rows) and 25 species (columns).

traits

Trait data; a data.frame with 32 species (rows) and 4 traits (columns)

Details

Obtained via the picante package (Kembel et al. 2010)

References

Webb, C.O., Ackerly, D.D., and Kembel, S.W. 2008. Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Version 4.0.1. http://www.phylodiversity.net/phylocom/.

Kembel, et al. Picante: R tools for integrating phylogenies and ecology, Bioinformatics 26: 1463–1464 \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1093/bioinformatics/btq166")}

Examples

# Example phylogeny
phylocom$phy
# Example community
phylocom$comm

canaper documentation built on May 31, 2023, 8:39 p.m.