Efficient tree manipulations for large phylogenies, including pruning, rerooting, calculation of mostrecent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters. Simulating and fitting models of trait evolution, and generating random trees using birthdeath models. Dating trees, comparing two trees, and reading/writing trees to a file. Citation: Louca, Stilianos and Doebeli, Michael (2017)
Package details 


Author  Stilianos Louca 
Date of publication  20180816 18:10:03 UTC 
Maintainer  Stilianos Louca <[email protected]> 
License  GPL (>= 2) 
Version  1.3.4 
Package repository  View on CRAN 
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