castor: Efficient Phylogenetics on Large Trees
Version 1.3.3

Efficient tree manipulations for large phylogenies, including pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters. Simulating and fitting models of trait evolution, and generating random trees using birth-death models. Dating trees, comparing two trees, and reading/writing trees to a file. Citation: Louca, Stilianos and Doebeli, Michael (2017) .

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Package details

AuthorStilianos Louca
Date of publication2018-04-11 18:32:39 UTC
MaintainerStilianos Louca <[email protected]>
LicenseGPL (>= 2)
Package repositoryView on CRAN
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castor documentation built on April 12, 2018, 1:03 a.m.