Files in castor
Efficient Phylogenetics on Large Trees

MD5
DESCRIPTION
NAMESPACE
inst/CITATION
R/reconstruct_past_diversification.R R/asr_empirical_probabilities.R R/pick_random_tips.R R/get_subtree_at_node.R R/get_subtree_with_tips.R R/collapse_tree_at_resolution.R R/fit_bm_model.R R/merge_short_edges.R R/asr_mk_model.R R/get_mrca_of_set.R R/simulate_neutral_gene_evolution.R R/write_tree.R R/root_via_outgroup.R R/root_at_midpoint.R R/find_nearest_tips.R R/get_independent_contrasts.R R/simulate_bm_model.R R/auxiliary_routines.R R/hsp_subtree_averaging.R R/get_random_diffusivity_matrix.R R/asr_subtree_averaging.R R/collapse_monofurcations.R R/hsp_empirical_probabilities.R R/map_to_state_space.R R/get_trait_depth.R R/simulate_rou_model.R R/count_clades_over_time.R R/get_tree_traversal_root_to_tips.R R/get_reds.R R/root_at_node.R R/root_in_edge.R R/extend_tree_to_height.R R/RcppExports.R R/congruent_divergence_times.R R/get_tips_for_mrcas.R R/get_trait_acf.R R/trim_tree_at_height.R R/get_pairwise_mrcas.R R/hsp_mk_model.R R/find_root.R R/hsp_max_parsimony.R R/generate_tree_with_evolving_rates.R R/exponentiate_matrix.R R/read_tree.R R/hsp_squared_change_parsimony.R R/simulate_ou_model.R R/date_tree_red.R R/asr_max_parsimony.R R/get_trait_stats_over_time.R R/get_all_distances_to_root.R R/get_stationary_distribution.R R/get_random_mk_transition_matrix.R R/date_tree_pl.R R/hsp_independent_contrasts.R R/find_farthest_tips.R R/get_pairwise_distances.R R/count_tips_per_node.R R/get_transition_index_matrix.R R/fit_tree_model.R R/tree_distance.R R/simulate_mk_model.R R/get_tree_span.R R/simulate_diversification_model.R R/generate_random_tree.R R/asr_independent_contrasts.R R/reorder_tree_edges.R R/get_transition_matrix_from_rate_vector.R R/find_root_of_monophyletic_tips.R R/get_all_node_depths.R R/multifurcations_to_bifurcations.R R/is_monophyletic.R R/asr_squared_change_parsimony.R
src/phylogenetics_cpp_routines.cpp
src/registerDynamicSymbol.c
src/RcppExports.cpp
man/hsp_mk_model.Rd man/simulate_ou_model.Rd man/tree_distance.Rd man/get_mrca_of_set.Rd man/simulate_bm_model.Rd man/write_tree.Rd man/hsp_squared_change_parsimony.Rd man/get_tree_traversal_root_to_tips.Rd man/trim_tree_at_height.Rd man/extend_tree_to_height.Rd man/multifurcations_to_bifurcations.Rd man/get_independent_contrasts.Rd man/get_subtree_with_tips.Rd man/castor.Rd man/get_tree_span.Rd man/collapse_tree_at_resolution.Rd man/is_monophyletic.Rd man/asr_subtree_averaging.Rd man/fit_bm_model.Rd man/get_pairwise_distances.Rd man/asr_independent_contrasts.Rd man/pick_random_tips.Rd man/get_random_diffusivity_matrix.Rd man/get_random_mk_transition_matrix.Rd man/hsp_independent_contrasts.Rd man/find_root_of_monophyletic_tips.Rd man/count_clades_over_time.Rd man/generate_tree_with_evolving_rates.Rd man/date_tree_red.Rd man/get_trait_stats_over_time.Rd man/simulate_mk_model.Rd man/get_all_distances_to_root.Rd man/count_tips_per_node.Rd man/find_farthest_tips.Rd man/find_nearest_tips.Rd man/simulate_diversification_model.Rd man/asr_mk_model.Rd man/reorder_tree_edges.Rd man/generate_random_tree.Rd man/root_at_midpoint.Rd man/get_trait_depth.Rd man/congruent_divergence_times.Rd man/asr_squared_change_parsimony.Rd man/find_root.Rd man/get_tips_for_mrcas.Rd man/reconstruct_past_diversification.Rd man/map_to_state_space.Rd man/simulate_rou_model.Rd man/get_subtree_at_node.Rd man/get_pairwise_mrcas.Rd man/hsp_max_parsimony.Rd man/asr_max_parsimony.Rd man/fit_tree_model.Rd man/get_all_node_depths.Rd man/get_stationary_distribution.Rd man/hsp_empirical_probabilities.Rd man/get_reds.Rd man/root_at_node.Rd man/root_via_outgroup.Rd man/exponentiate_matrix.Rd man/get_trait_acf.Rd man/merge_short_edges.Rd man/hsp_subtree_averaging.Rd man/read_tree.Rd man/asr_empirical_probabilities.Rd man/collapse_monofurcations.Rd man/root_in_edge.Rd
castor documentation built on April 12, 2018, 1:03 a.m.