cate: High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation
Version 1.0.4

Provides several methods for factor analysis in high dimension (both n,p >> 1) and methods to adjust for possible confounders in multiple hypothesis testing.

Browse man pages Browse package API and functions Browse package files

AuthorJingshu Wang [aut], Qingyuan Zhao [aut, cre]
Date of publication2015-10-05 12:37:43
MaintainerQingyuan Zhao <qyzhao@stanford.edu>
LicenseGPL-2
Version1.0.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("cate")

Man pages

adjust.latent: Adjust for latent factors, after rotationn
cate: The main function for confounder adjusted testing
cate-package: High dimensional factor analysis and confounder adjusted...
EigenDiff: the ed method to estimate the number of factors proposed by...
est.confounder.num: Estimate the number of confounders
factor.analysis: Factor analysis
fa.em: Factor analysis via EM algorithm to maximize likelihood
fa.pc: Factor analysis via principal components
gender.sm: Gender study dataset
gen.sim.data: Generate simulation data set
IPOD: changed IPOD function
leapp: original leapp function only added the resOpt.scale(beta.t)...
parse.cate.formula: Parse the formula in 'cate', and return a matrix of primary...
rlm.cate: Robust linear regression
wrapper: Wrapper functions for some previous methods

Functions

EigenDiff Man page Source code
IPOD Man page Source code
adjust.latent Man page Source code
cate Man page Source code
cate-package Man page
cate.fit Man page Source code
est.confounder.num Man page Source code
est.factor.num Man page Source code
fa.em Man page Source code
fa.pc Man page Source code
factor.analysis Man page Source code
gen.sim.data Man page Source code
gender.sm Man page
leapp Man page Source code
leapp.wrapper Man page Source code
parse.cate.formula Man page Source code
rlm.cate Man page Source code
ruv.wrapper Man page Source code
sva.wrapper Man page Source code
wrapper Man page

Files

inst
inst/doc
inst/doc/cate-vignette.Rnw
inst/doc/cate-vignette.R
inst/doc/cate-vignette.pdf
NAMESPACE
data
data/gender.sm.rda
R
R/adjust_functions.R
R/other_methods.R
R/simulate_functions.R
R/datasets.R
R/cate.R
R/factor_functions.R
vignettes
vignettes/cate-vignette.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/gen.sim.data.Rd
man/adjust.latent.Rd
man/EigenDiff.Rd
man/est.confounder.num.Rd
man/leapp.Rd
man/rlm.cate.Rd
man/cate-package.Rd
man/factor.analysis.Rd
man/gender.sm.Rd
man/wrapper.Rd
man/IPOD.Rd
man/fa.em.Rd
man/fa.pc.Rd
man/cate.Rd
man/parse.cate.formula.Rd
cate documentation built on May 19, 2017, 7:06 a.m.