tide.ci.zero.rho: Bootstrap samples of TIDE with zero correlation
In ccmm: Compositional Mediation Model

Description Usage Arguments Value Author(s) References Examples

Generate bootstrap samples of the total indirect effect (TIDE) when the correlation coefficient is zero

1	tide.ci.zero.rho(y, M, tr, x = NULL, w = NULL, n.boot=2000)

`y`	Vector of continuous outcomes
`M`	Matrix of compositional data
`tr`	Vector of continuous or binary treatments
`x`	Matrix of covariates
`w`	Vector of weights on samples
`n.boot`	Number of bootstrap samples

bootstrap samples of TIDE

Michael B. Sohn

Maintainer: Michael B. Sohn <msohn@mail.med.upenn.edu>

Sohn, M.B. and Li, H. (2017). Compositional Mediation Analysis for Microbiome Studies (AOAS: In revision)

# Load test data
data(ccmm_test_data);
outcome <- ccmm_test_data[,1];
treatment <- ccmm_test_data[,2];
mediators <- as.matrix(ccmm_test_data[,3:22]);
covariates <- as.matrix(ccmm_test_data[,23:24]);

cisa <- tide.ci.zero.rho(outcome, mediators, treatment, covariates, n.boot=200)