Description Usage Arguments Value Examples
View source: R/diagnosticPlots.R
Accepts the result of seqVsInsitu
and iterating_seqVsInsitu
and produces diagnostic plots.
If the sequencing data fits to one or more terms or combinations of terms, then the scatterplot will cluster into foci.
As the number of combined terms is increased the foci merge into fewer groups. A diagonal in the scatterplot is a sign of error.
1 | diagnosticPlots(seqVsInsitu_results)
|
seqVsInsitu_results |
Value of |
None.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | fpath <- system.file("extdata", "vncMedianCoverage.tsv", package="cellOrigins")
vncExpression <- read.delim(file = fpath, header=FALSE, as.is=TRUE)
expression <- vncExpression$V2
names(expression) <- vncExpression$V1
result <- seqVsInsitu(expression, depth=1)
diagnosticPlots(result)
## Not run:
oracleResponse <- iterating_seqVsInsitu(expression, 3)
diagnosticPlots(oracleResponse)
## End(Not run)
|
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