cghFLasso: Detecting hot spot on CGH array data with fused lasso regression.

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Spatial smoothing and hot spot detection using the fused lasso regression

Author
Nicholas Austin Johnson <nickaj@stanford.edu>, Robert Tibshirani <tibs@stat.stanford.edu>, Pei Wang <pwang@fhcrc.org>.
Date of publication
2009-06-07 19:19:51
Maintainer
Pei Wang <pwang@fhcrc.org>
License
GPL (>= 2)
Version
0.2-1

View on CRAN

Man pages

CGH
Example CGH Array Data
cghFLasso
A function to call alteration for CGH arrays using the fused...
cghFLasso.ref
A function to process reference CGH arrays using the fused...
output.cghFLasso
Output gain/loss calls by cghFLasso
plot.cghFLasso
A function to plot gain/loss calls on CGH arrays
summary.cghFLasso
Summarizing gain/loss calls by cghFLasso

Files in this package

cghFLasso
cghFLasso/man
cghFLasso/man/summary.cghFLasso.Rd
cghFLasso/man/cghFLasso.ref.Rd
cghFLasso/man/output.cghFLasso.Rd
cghFLasso/man/plot.cghFLasso.Rd
cghFLasso/man/cghFLasso.Rd
cghFLasso/man/CGH.Rd
cghFLasso/DESCRIPTION
cghFLasso/src
cghFLasso/src/smooth.f90
cghFLasso/src/L2L1VitExact.c
cghFLasso/INDEX
cghFLasso/R
cghFLasso/R/cghFLasso.R
cghFLasso/NAMESPACE
cghFLasso/data
cghFLasso/data/CGH.rda