Description Usage Format References
A list of four components (an example CGH array data for package cghFLasso
)
1 |
Both NormalArray
and DiseaseArray
are muneric matrix of 2270 rows and 3 columns: each row corresponds to one gene/clone,
and each column corresponds to one CGH array. The value of each entry is the log fluorescence
ratio resulted from the CGH experiment. The order of the genes/clones in the rows is the same as the order of the
genes/clones on the genome. chromosome
and nucposition
provide chromosome number and nucleotide
position for each gene/clone. \
GBM.y
is a numeric vertor of length 990, providing CGH measurement of one pseudo chromosome.
P. Wang, Y. Kim, J. Pollack, B. Narasimhan and R. Tibshirani, "A method for calling gains and losses in array CGH data", Biostatistics 2005, 6: 45-58, available at http://www-stat.stanford.edu/~wp57/CGH-Miner/
R. Tibshirani and P. Wang (2007) ‘Spatial smoothing and hot spot detection using the Fused Lasso’, Biostatistics (In press), available at http://www-stat.stanford.edu/~tibs/research.html.
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