API for cheddar
Analysis and Visualisation of Ecological Communities
| Global functions | |
|---|---|
| $<-.Community | Man page |
| $<-.CommunityCollection | Man page |
| .AddAxisTicks | Source code |
| .AddNodePropertiesToChains | Source code |
| .AggregateDataFrame | Source code |
| .AssembleProperties | Source code |
| .BlendColour | Source code |
| .CAdjacencyList | Source code |
| .CallAssemblePropertiesFunction | Source code |
| .ChainsWithProperties | Source code |
| .ColourAlpha | Source code |
| .ConvexHull | Source code |
| .DoLinksExist | Source code |
| .ExpectSingleUnique | Source code |
| .ExpectSingleUniqueEmptyRm | Source code |
| .GraphParNodeLabels | Source code |
| .GraphParamFromSpec | Source code |
| .HighlightBG | Source code |
| .HighlightCex | Source code |
| .HighlightColours | Source code |
| .HighlightLabelColours | Source code |
| .HighlightSymbols | Source code |
| .JoinUnique | Source code |
| .JoinUniqueEmptyRm | Source code |
| .MatrixInversionTL | Source code |
| .MaxNaRm | Source code |
| .MeanNaRm | Source code Source code |
| .MedianNaRm | Source code |
| .MinNaRm | Source code |
| .MinimisePredationMatrixGaps | Source code |
| .NodeGraphParamFromSpec | Source code |
| .NodesWithoutMOrN | Source code |
| .NvMThreeNodeChainProperties | Source code |
| .NvMTrophicChainProperties | Source code |
| .NvMTrophicLinkProperties | Source code |
| .PlotAbundanceSpectrum | Source code |
| .PlotHighlightedPoints | Source code |
| .PlotNetwork | Source code |
| .PlotNodes | Source code |
| .PlotPyramid | Source code |
| .PlotTrophicLinksAsNetwork | Source code |
| .PolygonArea | Source code |
| .PrintChains | Source code |
| .PyramidLevels | Source code |
| .RequireM | Source code |
| .RequireN | Source code |
| .RequireTrophicLinks | Source code |
| .ResolveLevel | Source code |
| .ResolveToNodeIndices | Source code |
| .ResolveTrophicLinkAxisLabel | Source code |
| .ResolveTrophicLinkProperty | Source code |
| .ResolveTrophicLinksToNodeNames | Source code |
| .ResolveTrophicLinksToRowIndices | Source code |
| .SimpleRBindFill | Source code |
| .StringStartsWith | Source code |
| .StripWhitespace | Source code |
| .SumNaRm | Source code |
| .SumPredationMatrixGap | Source code |
| .TrophicChainsSize | Source code |
| .TrophicLinkGraphParamFromSpec | Source code |
| .UnnamedString | Source code |
| .WriteForRob | Source code |
| .maxQueueOption | Source code |
| AggregateCommunities | Man page Source code |
| AggregateCommunitiesBy | Man page Source code |
| ApplyByClass | Man page Source code |
| BasalNodes | Man page Source code |
| Benguela | Man page |
| Biomass | Man page Source code |
| BodyMassBins | Man page Source code |
| BroadstoneStream | Man page |
| CP | Man page Source code |
| CPS | Man page Source code |
| CRMRatio | Man page Source code |
| Cannibals | Man page Source code |
| ChainAveragedTrophicLevel | Man page |
| CharacteristicPathLength | Man page Source code |
| ChesapeakeBay | Man page |
| CollectionApply | Man page Source code |
| CollectionCPS | Man page Source code |
| CollectionNPS | Man page Source code |
| CollectionTLPS | Man page Source code |
| Community | Man page Source code |
| CommunityCollection | Man page Source code |
| CommunityPropertyNames | Man page Source code |
| ConnectedNodes | Man page Source code |
| ConsumersByNode | Man page Source code |
| ConsumersOfNodes | Man page Source code |
| DefaultCategoryColours | Man page Source code |
| DefaultCategoryLabelColours | Man page Source code |
| DefaultCategorySymbols | Man page Source code |
| DefaultLinkColour | Man page Source code |
| Degree | Man page Source code |
| DegreeDistribution | Man page Source code |
| DirectedConnectance | Man page Source code |
| FlowBasedTrophicLevel | Man page Source code |
| FormatLM | Man page Source code |
| FractionBasalNodes | Man page Source code |
| FractionCannibalistic | Man page Source code |
| FractionConnectedNodes | Man page Source code |
| FractionIntermediateNodes | Man page Source code |
| FractionIsolatedNodes | Man page Source code |
| FractionNonBasalNodes | Man page Source code |
| FractionNonConnectedNodes | Man page |
| FractionNonTopLevelNodes | Man page Source code |
| FractionOfNodesByClass | Man page Source code |
| FractionOmnivorous | Man page |
| FractionTopLevelNodes | Man page Source code |
| HasM | Man page Source code |
| HasN | Man page Source code |
| HasTrophicLinks | Man page Source code |
| InDegree | Man page |
| IntermediateNodes | Man page Source code |
| Intervality | Man page |
| IsBasalNode | Man page Source code |
| IsCannibal | Man page Source code |
| IsConnectedNode | Man page Source code |
| IsIntermediateNode | Man page Source code |
| IsIsolatedNode | Man page Source code |
| IsNonBasalNode | Man page Source code |
| IsNonTopLevelNode | Man page Source code |
| IsOmnivore | Man page Source code |
| IsTopLevelNode | Man page Source code |
| IsolatedNodes | Man page Source code |
| LMabline | Man page Source code |
| LinearRegressionByClass | Man page Source code |
| LinkageDensity | Man page Source code |
| LoadCollection | Man page Source code |
| LoadCommunity | Man page Source code |
| Log10BLabel | Man page Source code |
| Log10Biomass | Man page Source code |
| Log10CRMRatio | Man page Source code |
| Log10M | Man page Source code |
| Log10MLabel | Man page Source code |
| Log10MNBiomass | Man page Source code |
| Log10N | Man page Source code |
| Log10NLabel | Man page Source code |
| Log10RCMRatio | Man page Source code |
| LongWeightedTrophicLevel | Man page Source code |
| LongestTrophicLevel | Man page Source code |
| LumpNodes | Man page Source code |
| LumpTrophicSpecies | Man page Source code |
| MeanMaximumTrophicSimilarity | Man page Source code |
| Millstream | Man page |
| MinimiseSumConsumerGaps | Man page Source code |
| MinimiseSumDietGaps | Man page Source code |
| NP | Man page Source code |
| NPS | Man page Source code |
| NodeNameIndices | Man page Source code |
| NodePropertyNames | Man page Source code |
| NodeQuantitativeDescriptors | Man page Source code |
| NonBasalNodes | Man page Source code |
| NonTopLevelNodes | Man page Source code |
| NormalisedTrophicGenerality | Man page Source code |
| NormalisedTrophicVulnerability | Man page Source code |
| NumberOfConsumers | Man page Source code |
| NumberOfNodes | Man page Source code |
| NumberOfNodesByClass | Man page Source code |
| NumberOfResources | Man page Source code |
| NumberOfTrophicLinks | Man page Source code |
| NvMConvexHull | Man page Source code |
| NvMIntercept | Man page Source code |
| NvMInterceptByClass | Man page Source code |
| NvMLinearRegressions | Man page Source code |
| NvMSlope | Man page Source code |
| NvMSlopeAndIntercept | Man page Source code |
| NvMSlopeAndInterceptByClass | Man page Source code |
| NvMSlopeByClass | Man page Source code |
| NvMTriTrophicStatistics | Man page Source code |
| NvMTriTrophicTable | Man page Source code |
| Omnivores | Man page Source code |
| Omnivory | Man page Source code |
| OrderCollection | Man page Source code |
| OrderCommunity | Man page Source code |
| OutDegree | Man page |
| PlaceMissingPoints | Man page Man page Source code |
| PlotAuppervAlower | Man page Source code |
| PlotBCvBR | Man page Source code |
| PlotBDistribution | Man page Source code |
| PlotBPyramid | Man page Source code |
| PlotBRvBC | Man page Source code |
| PlotBSpectrum | Man page Source code |
| PlotBvM | Man page Source code |
| PlotBvRankB | Man page Source code |
| PlotCircularWeb | Man page Source code |
| PlotDegreeDistribution | Man page Source code |
| PlotLinearModels | Man page Source code |
| PlotMCvMR | Man page Source code |
| PlotMDistribution | Man page Source code |
| PlotMRvMC | Man page Source code |
| PlotMvB | Man page Source code |
| PlotMvN | Man page Source code |
| PlotMvRankM | Man page Source code |
| PlotNCvNR | Man page Source code |
| PlotNDistribution | Man page Source code |
| PlotNPS | Man page Source code |
| PlotNPSDistribution | Man page Source code |
| PlotNPyramid | Man page Source code |
| PlotNRvNC | Man page Source code |
| PlotNSpectrum | Man page Source code |
| PlotNvM | Man page Source code |
| PlotNvRankN | Man page Source code |
| PlotPredationMatrix | Man page Source code |
| PlotRankNPS | Man page Source code |
| PlotTLPS | Man page Source code |
| PlotWagonWheel | Man page Source code |
| PlotWebByLevel | Man page Source code |
| PredationMatrix | Man page Source code |
| PredationMatrixToLinks | Man page Source code |
| PreyAveragedTrophicLevel | Man page Source code |
| QuantitativeDescriptors | Man page Source code |
| RCMRatio | Man page Source code |
| RemoveCannibalisticLinks | Man page Source code |
| RemoveIsolatedNodes | Man page Source code |
| RemoveNodes | Man page Source code |
| ResourceLargerThanConsumer | Man page Source code |
| ResourcesAndConsumersByNode | Man page Source code |
| ResourcesByNode | Man page Source code |
| ResourcesOfNodes | Man page Source code |
| SaveCollection | Man page Source code |
| SaveCommunity | Man page Source code |
| ShortWeightedTrophicLevel | Man page Source code |
| ShortestPaths | Man page Source code |
| ShortestTrophicLevel | Man page Source code |
| SiteBySpeciesMatrix | Man page Source code |
| SkipwithPond | Man page |
| SumBiomassByClass | Man page Source code |
| SumConsumerGaps | Man page Source code |
| SumDietGaps | Man page Source code |
| SumMByClass | Man page Source code |
| SumNByClass | Man page Source code |
| TL84 | Man page |
| TL86 | Man page |
| TLP | Man page Source code |
| TLPS | Man page Source code |
| ThreeNodeChains | Man page Source code |
| TopLevelNodes | Man page Source code |
| TrophicChains | Man page Source code |
| TrophicChainsStats | Man page Source code |
| TrophicGenerality | Man page |
| TrophicHeight | Man page Source code |
| TrophicLevels | Man page Source code |
| TrophicLinkPropertyNames | Man page Source code |
| TrophicLinksForNodes | Man page Source code |
| TrophicSimilarity | Man page Source code |
| TrophicSpecies | Man page Source code |
| TrophicVulnerability | Man page |
| YthanEstuary | Man page |
| [.CommunityCollection | Man page |
| [<-.Community | Man page |
| [<-.CommunityCollection | Man page |
| [[<-.Community | Man page |
| [[<-.CommunityCollection | Man page |
| cheddar | Man page Man page |
| cheddar-package | Man page |
| dim<-.Community | Man page |
| dim<-.CommunityCollection | Man page |
| is.Community | Man page Source code |
| is.CommunityCollection | Man page Source code |
| length<-.Community | Man page |
| length<-.CommunityCollection | Man page |
| levels<-.Community | Man page |
| levels<-.CommunityCollection | Man page |
| names<-.Community | Man page |
| names<-.CommunityCollection | Man page |
| pHWebs | Man page |
| plot.Community | Man page Source code |
| plot.CommunityCollection | Man page Source code |
| print.Community | Man page Source code |
| print.CommunityCollection | Man page Source code |
| subset.CommunityCollection | Man page Source code |
| summary.Community | Man page Source code |
| summary.CommunityCollection | Man page Source code |
