Files in cheddar
Analysis and Visualisation of Ecological Communities
.Rinstignore
MD5
NAMESPACE
DESCRIPTION
LICENSE
R/graph_util.R
R/community_trophic_links.R
R/config.R
R/graph_nodes.R
R/community.R
R/util.R
R/community_collection.R
R/community_MN.R
R/chains.R
R/graph_trophic_links.R
R/graph.R
R/aggregate.R
src/cheddar.cpp
src/anneal.cpp
src/trophic_chains.cpp
src/cheddar.h
src/cheddar_exception.h
src/shortest_paths.cpp
inst/CITATION
inst/doc/PlotsAndStats.Rnw
inst/doc/Community.pdf
inst/doc/ImportExport.pdf
inst/doc/ImportExport.R
inst/doc/PlotsAndStats.pdf
inst/doc/CheddarQuickstart.R
inst/doc/Community.R
inst/doc/Collections.R
inst/doc/PlotsAndStats.R
inst/doc/Collections.pdf
inst/doc/CheddarQuickstart.Rnw
inst/doc/Community.Rnw
inst/doc/ImportExport.Rnw
inst/doc/Collections.Rnw
inst/doc/CheddarQuickstart.pdf
tests/graph_tests.R
tests/community_collection_test.R
tests/community_trophic_links_test.R
tests/community_MN_test.R
tests/util_test.R
tests/run.R
tests/community_test.R
vignettes/PlotsAndStats.Rnw
vignettes/CheddarQuickstart.Rnw
vignettes/Community.Rnw
vignettes/ImportExport.Rnw
vignettes/Collections.Rnw
vignettes/cheddar.bib
vignettes/Stream12/trophic.links.csv
vignettes/Stream12/properties.csv
vignettes/Stream12/nodes.csv
vignettes/Grassland1994/communities/Plot1/trophic.links.csv
vignettes/Grassland1994/communities/Plot1/properties.csv
vignettes/Grassland1994/communities/Plot1/nodes.csv
vignettes/Grassland1994/communities/Plot3/trophic.links.csv
vignettes/Grassland1994/communities/Plot3/properties.csv
vignettes/Grassland1994/communities/Plot3/nodes.csv
vignettes/Grassland1994/communities/Plot2/trophic.links.csv
vignettes/Grassland1994/communities/Plot2/properties.csv
vignettes/Grassland1994/communities/Plot2/nodes.csv
data/BroadstoneStream.RData
data/Millstream.RData
data/ChesapeakeBay.RData
data/Benguela.RData
data/SkipwithPond.RData
data/TL84.RData
data/TL86.RData
data/YthanEstuary.RData
data/pHWebs.RData
man/OrderCollection.Rd
man/NodePropertyNames.Rd
man/TL84.Rd
man/RemoveIsolatedNodes.Rd
man/CP.Rd
man/NvMTriTrophicTable.Rd
man/NumberOfTrophicLinks.Rd
man/IsCannibal.Rd
man/ThreeNodeChains.Rd
man/PredationMatrixToLinks.Rd
man/LumpTrophicSpecies.Rd
man/OrderCommunity.Rd
man/Millstream.Rd
man/TrophicSpecies.Rd
man/NumberOfNodes.Rd
man/RemoveCannibalisticLinks.Rd
man/cheddar.Rd
man/Benguela.Rd
man/ChesapeakeBay.Rd
man/RemoveNodes.Rd
man/NP.Rd
man/CollectionTLPS.Rd
man/PlotHelpers.Rd
man/TrophicChains.Rd
man/PlotSpectrum.Rd
man/PredationMatrix.Rd
man/SkipwithPond.Rd
man/BodyMassB.Rd
man/LoadCommunity.Rd
man/PlotWagonWheel.Rd
man/PlotCircularWeb.Rd
man/ShortestPaths.Rd
man/NodeNameIndices.Rd
man/NPS.Rd
man/LinearRegressionByClass.Rd
man/TLP.Rd
man/DegreeDistribution.Rd
man/Community.Rd
man/PlotNPS.Rd
man/TrophicSimilarity.Rd
man/NodeConnectivity.Rd
man/NvMConvexHull.Rd
man/BroadstoneStream.Rd
man/subset.CommunityCollection.Rd
man/ApplyByClass.Rd
man/LumpNodes.Rd
man/CommunityCollection.Rd
man/ResourcesByNode.Rd
man/TrophicChainsStats.Rd
man/TLPS.Rd
man/PlotNPSDistribution.Rd
man/CommunityHas.Rd
man/ResourceLargerThanConsumer.Rd
man/LoadCollection.Rd
man/QuantitativeDescriptors.Rd
man/NvMLinearRegressions.Rd
man/CommunityPropertyNames.Rd
man/CollectionCPS.Rd
man/Degree.Rd
man/NvMTriTrophicStatistics.Rd
man/NodeMNUtilities.Rd
man/Intervality.Rd
man/CollectionNPS.Rd
man/CPS.Rd
man/Omnivory.Rd
man/YthanEstuary.Rd
man/PlotWebByLevel.Rd
man/PlotPyramid.Rd
man/PlotRankNPS.Rd
man/pHWebs.Rd
man/CollectionApply.Rd
man/TrophicLevels.Rd
man/SiteBySpeciesMatrix.Rd
man/PlotTLPS.Rd
man/PlotAuppervAlower.Rd
man/AggregateCommunities.Rd
man/TrophicLinkPropertyNames.Rd
