API for cheddar
Analysis and Visualisation of Ecological Communities

Global functions
$<-.Community Man page
$<-.CommunityCollection Man page
.AddAxisTicks Source code
.AddNodePropertiesToChains Source code
.AggregateDataFrame Source code
.AssembleProperties Source code
.BlendColour Source code
.CAdjacencyList Source code
.CallAssemblePropertiesFunction Source code
.ChainsWithProperties Source code
.ColourAlpha Source code
.ConvexHull Source code
.DoLinksExist Source code
.ExpectSingleUnique Source code
.ExpectSingleUniqueEmptyRm Source code
.GraphParNodeLabels Source code
.GraphParamFromSpec Source code
.HighlightBG Source code
.HighlightCex Source code
.HighlightColours Source code
.HighlightLabelColours Source code
.HighlightSymbols Source code
.JoinUnique Source code
.JoinUniqueEmptyRm Source code
.MatrixInversionTL Source code
.MaxNaRm Source code
.MeanNaRm Source code Source code
.MedianNaRm Source code
.MinNaRm Source code
.MinimisePredationMatrixGaps Source code
.NodeGraphParamFromSpec Source code
.NodesWithoutMOrN Source code
.NvMThreeNodeChainProperties Source code
.NvMTrophicChainProperties Source code
.NvMTrophicLinkProperties Source code
.PlotAbundanceSpectrum Source code
.PlotHighlightedPoints Source code
.PlotNetwork Source code
.PlotNodes Source code
.PlotPyramid Source code
.PlotTrophicLinksAsNetwork Source code
.PolygonArea Source code
.PrintChains Source code
.PyramidLevels Source code
.RequireM Source code
.RequireN Source code
.RequireTrophicLinks Source code
.ResolveLevel Source code
.ResolveToNodeIndices Source code
.ResolveTrophicLinkAxisLabel Source code
.ResolveTrophicLinkProperty Source code
.ResolveTrophicLinksToNodeNames Source code
.ResolveTrophicLinksToRowIndices Source code
.SimpleRBindFill Source code
.StringStartsWith Source code
.StripWhitespace Source code
.SumNaRm Source code
.SumPredationMatrixGap Source code
.TrophicChainsSize Source code
.TrophicLinkGraphParamFromSpec Source code
.UnnamedString Source code
.WriteForRob Source code
.maxQueueOption Source code
AggregateCommunities Man page Source code
AggregateCommunitiesBy Man page Source code
ApplyByClass Man page Source code
BasalNodes Man page Source code
Benguela Man page
Biomass Man page Source code
BodyMassBins Man page Source code
BroadstoneStream Man page
CP Man page Source code
CPS Man page Source code
CRMRatio Man page Source code
Cannibals Man page Source code
ChainAveragedTrophicLevel Man page
CharacteristicPathLength Man page Source code
ChesapeakeBay Man page
CollectionApply Man page Source code
CollectionCPS Man page Source code
CollectionNPS Man page Source code
CollectionTLPS Man page Source code
Community Man page Source code
CommunityCollection Man page Source code
CommunityPropertyNames Man page Source code
ConnectedNodes Man page Source code
ConsumersByNode Man page Source code
ConsumersOfNodes Man page Source code
DefaultCategoryColours Man page Source code
DefaultCategoryLabelColours Man page Source code
DefaultCategorySymbols Man page Source code
DefaultLinkColour Man page Source code
Degree Man page Source code
DegreeDistribution Man page Source code
DirectedConnectance Man page Source code
FlowBasedTrophicLevel Man page Source code
FormatLM Man page Source code
FractionBasalNodes Man page Source code
FractionCannibalistic Man page Source code
FractionConnectedNodes Man page Source code
FractionIntermediateNodes Man page Source code
FractionIsolatedNodes Man page Source code
FractionNonBasalNodes Man page Source code
FractionNonConnectedNodes Man page
FractionNonTopLevelNodes Man page Source code
FractionOfNodesByClass Man page Source code
FractionOmnivorous Man page
FractionTopLevelNodes Man page Source code
HasM Man page Source code
HasN Man page Source code
HasTrophicLinks Man page Source code
InDegree Man page
IntermediateNodes Man page Source code
Intervality Man page
IsBasalNode Man page Source code
IsCannibal Man page Source code
IsConnectedNode Man page Source code
IsIntermediateNode Man page Source code
IsIsolatedNode Man page Source code
IsNonBasalNode Man page Source code
IsNonTopLevelNode Man page Source code
IsOmnivore Man page Source code
IsTopLevelNode Man page Source code
IsolatedNodes Man page Source code
LMabline Man page Source code
LinearRegressionByClass Man page Source code
LinkageDensity Man page Source code
LoadCollection Man page Source code
LoadCommunity Man page Source code
Log10BLabel Man page Source code
Log10Biomass Man page Source code
Log10CRMRatio Man page Source code
Log10M Man page Source code
Log10MLabel Man page Source code
Log10MNBiomass Man page Source code
Log10N Man page Source code
Log10NLabel Man page Source code
Log10RCMRatio Man page Source code
LongWeightedTrophicLevel Man page Source code
LongestTrophicLevel Man page Source code
LumpNodes Man page Source code
LumpTrophicSpecies Man page Source code
MeanMaximumTrophicSimilarity Man page Source code
Millstream Man page
MinimiseSumConsumerGaps Man page Source code
MinimiseSumDietGaps Man page Source code
NP Man page Source code
NPS Man page Source code
NodeNameIndices Man page Source code
NodePropertyNames Man page Source code
NodeQuantitativeDescriptors Man page Source code
NonBasalNodes Man page Source code
NonTopLevelNodes Man page Source code
NormalisedTrophicGenerality Man page Source code
NormalisedTrophicVulnerability Man page Source code
NumberOfConsumers Man page Source code
NumberOfNodes Man page Source code
NumberOfNodesByClass Man page Source code
NumberOfResources Man page Source code
NumberOfTrophicLinks Man page Source code
NvMConvexHull Man page Source code
NvMIntercept Man page Source code
NvMInterceptByClass Man page Source code
NvMLinearRegressions Man page Source code
NvMSlope Man page Source code
NvMSlopeAndIntercept Man page Source code
NvMSlopeAndInterceptByClass Man page Source code
NvMSlopeByClass Man page Source code
NvMTriTrophicStatistics Man page Source code
NvMTriTrophicTable Man page Source code
Omnivores Man page Source code
Omnivory Man page Source code
OrderCollection Man page Source code
OrderCommunity Man page Source code
OutDegree Man page
PlaceMissingPoints Man page Man page Source code
PlotAuppervAlower Man page Source code
PlotBCvBR Man page Source code
PlotBDistribution Man page Source code
PlotBPyramid Man page Source code
PlotBRvBC Man page Source code
PlotBSpectrum Man page Source code
PlotBvM Man page Source code
PlotBvRankB Man page Source code
PlotCircularWeb Man page Source code
PlotDegreeDistribution Man page Source code
PlotLinearModels Man page Source code
PlotMCvMR Man page Source code
PlotMDistribution Man page Source code
PlotMRvMC Man page Source code
PlotMvB Man page Source code
PlotMvN Man page Source code
PlotMvRankM Man page Source code
PlotNCvNR Man page Source code
PlotNDistribution Man page Source code
PlotNPS Man page Source code
PlotNPSDistribution Man page Source code
PlotNPyramid Man page Source code
PlotNRvNC Man page Source code
PlotNSpectrum Man page Source code
PlotNvM Man page Source code
PlotNvRankN Man page Source code
PlotPredationMatrix Man page Source code
PlotRankNPS Man page Source code
PlotTLPS Man page Source code
PlotWagonWheel Man page Source code
PlotWebByLevel Man page Source code
PredationMatrix Man page Source code
PredationMatrixToLinks Man page Source code
PreyAveragedTrophicLevel Man page Source code
QuantitativeDescriptors Man page Source code
RCMRatio Man page Source code
RemoveCannibalisticLinks Man page Source code
RemoveIsolatedNodes Man page Source code
RemoveNodes Man page Source code
ResourceLargerThanConsumer Man page Source code
ResourcesAndConsumersByNode Man page Source code
ResourcesByNode Man page Source code
ResourcesOfNodes Man page Source code
SaveCollection Man page Source code
SaveCommunity Man page Source code
ShortWeightedTrophicLevel Man page Source code
ShortestPaths Man page Source code
ShortestTrophicLevel Man page Source code
SiteBySpeciesMatrix Man page Source code
SkipwithPond Man page
SumBiomassByClass Man page Source code
SumConsumerGaps Man page Source code
SumDietGaps Man page Source code
SumMByClass Man page Source code
SumNByClass Man page Source code
TL84 Man page
TL86 Man page
TLP Man page Source code
TLPS Man page Source code
ThreeNodeChains Man page Source code
TopLevelNodes Man page Source code
TrophicChains Man page Source code
TrophicChainsStats Man page Source code
TrophicGenerality Man page
TrophicHeight Man page Source code
TrophicLevels Man page Source code
TrophicLinkPropertyNames Man page Source code
TrophicLinksForNodes Man page Source code
TrophicSimilarity Man page Source code
TrophicSpecies Man page Source code
TrophicVulnerability Man page
YthanEstuary Man page
[.CommunityCollection Man page
[<-.Community Man page
[<-.CommunityCollection Man page
[[<-.Community Man page
[[<-.CommunityCollection Man page
cheddar Man page Man page
cheddar-package Man page
dim<-.Community Man page
dim<-.CommunityCollection Man page
is.Community Man page Source code
is.CommunityCollection Man page Source code
length<-.Community Man page
length<-.CommunityCollection Man page
levels<-.Community Man page
levels<-.CommunityCollection Man page
names<-.Community Man page
names<-.CommunityCollection Man page
pHWebs Man page
plot.Community Man page Source code
plot.CommunityCollection Man page Source code
print.Community Man page Source code
print.CommunityCollection Man page Source code
subset.CommunityCollection Man page Source code
summary.Community Man page Source code
summary.CommunityCollection Man page Source code
cheddar documentation built on Feb. 13, 2020, 5:07 p.m.