citbcmst: CIT Breast Cancer Molecular SubTypes Prediction

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This package implements the approach to assign tumor gene expression dataset to the 6 CIT Breast Cancer Molecular Subtypes described in Guedj et al 2012.

Author
Laetitia Marisa, Aurelien de Reynies, Mickael Guedj
Date of publication
2014-01-10 13:13:30
Maintainer
Laetitia Marisa<MarisaL@ligue-cancer.net>
License
GPL (>= 2)
Version
1.0.4
URLs

View on CRAN

Man pages

bertheau07
Affymetrix (U133A) Breast Cancer Expression Data from...
chanrion08
Non Affymetrix Breast Cancer Expression dataset from Chanrion...
cit.assignBcmst
cit.assignBcmst
citbcmst
Coreset data used to classify data in Guedj et 2011
cit.centroids
cit.centroids
cit.dfAggregate
cit.dfAggregate
cit.dist
cit.dist
cit.distToCentroids
cit.distToCentroids

Files in this package

citbcmst
citbcmst/inst
citbcmst/inst/extdata
citbcmst/inst/extdata/exp.norm.bertheau07.RData
citbcmst/inst/extdata/exp.norm.chanrion08.RData
citbcmst/inst/doc
citbcmst/inst/doc/citbcmstdemo.R
citbcmst/inst/doc/citbcmstdemo.pdf
citbcmst/inst/doc/citbcmstdemo.rnw
citbcmst/NAMESPACE
citbcmst/data
citbcmst/data/citbcmst.RData
citbcmst/data/datalist
citbcmst/R
citbcmst/R/cit.centroidsFunc.R
citbcmst/R/cit.bcmst.R
citbcmst/vignettes
citbcmst/vignettes/citbcmstdemo.rnw
citbcmst/MD5
citbcmst/build
citbcmst/build/vignette.rds
citbcmst/DESCRIPTION
citbcmst/man
citbcmst/man/cit.dist.Rd
citbcmst/man/cit.centroids.Rd
citbcmst/man/citbcmst.Rd
citbcmst/man/cit.dfAggregate.Rd
citbcmst/man/cit.assignBcmst.Rd
citbcmst/man/cit.distToCentroids.Rd
citbcmst/man/bertheau07.Rd
citbcmst/man/chanrion08.Rd