citccmst: CIT Colon Cancer Molecular SubTypes Prediction

This package implements the approach to assign tumor gene expression dataset to the 6 CIT Colon Cancer Molecular Subtypes described in Marisa et al 2013.

Install the latest version of this package by entering the following in R:
install.packages("citccmst")
AuthorLaetitia Marisa
Date of publication2014-01-10 13:13:32
MaintainerLaetitia Marisa<MarisaL@ligue-cancer.net>
LicenseGPL (>= 2)
Version1.0.2
http://cit.ligue-cancer.net

View on CRAN

Files

inst
inst/extdata
inst/extdata/citvalid.exp.norm.RData
inst/doc
inst/doc/citccmstdemo.rnw
inst/doc/citccmstdemo.pdf
inst/doc/citccmstdemo.R
NAMESPACE
data
data/citccmst.RData
R
R/cit.centroidsFunc.R R/cit.ccmst.R
vignettes
vignettes/citccmstdemo.rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/cit.dist.Rd man/cit.centroids.Rd man/cit.dfAggregate.Rd man/cit.distToCentroids.Rd man/citccmst.Rd man/cit.assignCcmst.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.