Files in cloneRate
Estimate Growth Rates from Phylogenetic Trees
configure
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
configure.win
R/stanmodels.R
R/realData.R
R/siteFrequency.R
R/exampleData.R
R/growthRateMethods.R
R/simTrees.R
R/cloneRate-package.R
src/Makevars
src/RcppExports.cpp
src/stanExports_bdSampler.h
src/stanExports_bdSampler.cc
inst/CITATION
inst/include/stan_meta_header.hpp
inst/doc/cloneRate-dataAnalysis.R
inst/doc/cloneRate-simulate.R
inst/doc/cloneRate-simulate.Rmd
inst/doc/cloneRate-dataAnalysis.html
inst/doc/cloneRate-simulate.html
inst/doc/cloneRate-dataAnalysis.Rmd
inst/stan/bdSampler.stan
build/vignette.rds
tests/testthat.R
tests/testthat/test-growthRateMethods.R
tests/testthat/test-simTrees.R
tests/testthat/test-siteFrequency.R
vignettes/cloneRate-simulate.Rmd
vignettes/cloneRate-dataAnalysis.Rmd
data/exampleMutTrees.rda
data/exampleUltraTrees.rda
data/longitudinalData.rda
data/realCloneData.rda
man/birthDeathMCMC.Rd
man/internalLengths.Rd
man/inputCheck.Rd
man/realCloneData.Rd
man/ultra2mut.Rd
man/maxLikelihood.Rd
man/coal_to_tree.Rd
man/exampleMutTrees.Rd
man/cloneRate-package.Rd
man/siteFrequency.Rd
man/simUltra.Rd
man/exampleUltraTrees.Rd
man/longitudinalData.Rd
man/simMut.Rd
man/sharedMuts.Rd
man/figures/README-plotTree-1.png
man/figures/README-plotExample-1.png
man/figures/README-realDataExample-1.png
man/figures/logo.png
man/figures/README-getSubclone-1.png
man/figures/README-simPlot-1.png
