clues: Clustering Method Based on Local

We developed the clues R package to provide functions for automatically estimating the number of clusters and getting the final cluster partition without any input parameter except the stopping rule for convergence. The package also provides functions to evaluate and compare the performances of partitions of a data set both numerically and graphically.

Author
Fang Chang [aut, ctb], Weiliang Qiu [aut, cre], Vincent Carey [aut, ctb], Ruben H. Zamar [aut, ctb], Ross Lazarus [aut, ctb], Xiaogang Wang [aut, ctb]
Date of publication
2016-10-14 08:16:08
Maintainer
Weiliang Qiu <stwxq@channing.harvard.edu>
License
GPL (>= 2)
Version
0.5.9

View on CRAN

Man pages

adjustedRand
Calculate Agreement Indices Between Two Partitions for a Data...
clues
Clustering Method Based on Local Shrinking
clustering
Data Clustering (After Data Shrinking)
compClust
Compare different partitions for a data set
Curve
Curve Data Set
get_CH
Compute CH Index
get_Silhouette
Compute Silhouette Index
Maronna
The Maronna Data Set
plotAvgCurves
Average Trajectory Plot for Each Cluster
plot.clues
Draw Scatter Plots or Plot of Average Trajectory per Cluster,...
plotClusters
Scatter Plots of Clusters in Specified Dimensions
plotCurves
Plot Trajectories for Each Cluster
print.clues
Print Method for CLUES Objects
Ring
The Broken-Ring Data Set
shrinking
Data Sharpening Based on K-nearest Neighbors
summary.clues
Summary Method for CLUES Objects
Vowel
The Vowel Data Set

Files in this package

clues
clues/inst
clues/inst/CITATION
clues/inst/doc
clues/inst/doc/vignettes
clues/inst/doc/vignettes/WDBC.dat
clues/inst/doc/vignettes/clues.Rnw
clues/inst/doc/vignettes/log_running_time_p.pdf
clues/inst/doc/vignettes/clues.pdf
clues/inst/doc/vignettes/clues.bib
clues/inst/doc/vignettes/log_running_time.pdf
clues/src
clues/src/silhouette3.f95
clues/src/dmedian.f95
clues/src/clustering2.f95
clues/src/sharpen2.f95
clues/src/dsort.f95
clues/src/adjustedRand.c
clues/src/CH.f95
clues/src/chooseK.f95
clues/NAMESPACE
clues/NEWS
clues/data
clues/data/Curve.rda
clues/data/Vowel.rda
clues/data/Ring.rda
clues/data/Maronna.rda
clues/R
clues/R/clues.R
clues/R/compClust.R
clues/R/clues_sil.R
clues/R/clues_CH.R
clues/R/shrinking.R
clues/R/clustering.R
clues/R/rankDist.R
clues/R/adjustedRand.R
clues/R/view.R
clues/MD5
clues/DESCRIPTION
clues/man
clues/man/get_CH.Rd
clues/man/Maronna.Rd
clues/man/print.clues.Rd
clues/man/shrinking.Rd
clues/man/plotAvgCurves.Rd
clues/man/Vowel.Rd
clues/man/plotCurves.Rd
clues/man/plotClusters.Rd
clues/man/compClust.Rd
clues/man/Ring.Rd
clues/man/clustering.Rd
clues/man/get_Silhouette.Rd
clues/man/plot.clues.Rd
clues/man/summary.clues.Rd
clues/man/clues.Rd
clues/man/adjustedRand.Rd
clues/man/Curve.Rd
clues/INDEX