expressionPlot: Generate a profile plot for the data partitioned by cluster...

In clusterCons: Consensus Clustering using Multiple Algorithms and Parameters

Generate a profile plot for the data partitioned by cluster membership.

Description

This function uses the lattice function xyplot to generate a profile plot of the data values grouped by cluster in a multi-panel plot. The function takes as input the original data.frame() and a valid "consmatrix" class object (see consmatrix-class) by which to segregate the data.

Usage

expressionPlot(x,cm);

Arguments

x	the original data.frame() object used in the clustering.
cm	a valid "consmatrix" class object generated by the cluscomp function.

Value

No return value, called for side effects

Author(s)

Dr. T. Ian Simpson [e-mail]

References

Merged consensus clustering to assess and improve class discovery with microarray data. Simpson TI, Armstrong JD and Jarman AP. BMC Bioinformatics 2010, 11:590.

See Also

consmatrix-class

Examples

#load up the data set
data(sim_profile);

#load up an example cluscomp result with this data
data('testcmr');

#plot the expression profiles
expressionPlot(sim_profile,testcmr$e1_kmeans_k4);

clusterCons documentation built on March 18, 2022, 5:16 p.m.