clusterfly: Explore clustering interactively using R and GGobi

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Visualise clustering algorithms with GGobi. Contains both general code for visualising clustering results and specific visualisations for model-based, hierarchical and SOM clustering.

Author
Hadley Wickham <h.wickham@gmail.com>
Date of publication
2014-04-24 07:43:09
Maintainer
Hadley Wickham <h.wickham@gmail.com>
License
MIT + file LICENSE
Version
0.4
URLs

View on CRAN

Man pages

addhull
Add convex hulls Add conver hulls using the tool qconvex
as.data.frame.clusterfly
Convert clusterfly object to data.frame. Concatenates data...
cfly_animate
Dynamic plot: Animate glyph colours
cfly_clarify
Match all cluster indices to common reference.
cfly_cluster
Add clustering.
cfly_dist
Static plot: Variable distribution. Draw a density plot for...
cfly_fluct
Static plot: Fluctuation diagram. Draw a fluctuation diagram...
cfly_pcp
Static plot: Parallel coordinates. Draw a parallel...
cfly_show
Show in ggobi. Opens an instance ggobi for this dataset (if...
clarify
Clarify matrix Clarify matrix ordering to minimize off...
clusterfly
Creates a convenient data structure for dealing with a...
clusters
Extract clusters from clustering object.
cut.hierfly
Cut hierfly object into k clusters/colours.
ellipse
Create multivariate ellipse. Randomly sample points from a...
ggobi.hierfly
Visualise hierarchical clustering with GGobi. Displays both...
ggobi.som
Visualise Kohonen self organising maps with GGobi Displays...
hierarchical
Hierachical clustering Convenient methods for hierachical...
hierfly
Visualisig hierarchical clustering. This method supplements a...
mefly
Display model based clustering with mvn ellipses. Displays...
olive_example
Example clusterfly object created with olives data

Files in this package

clusterfly
clusterfly/NAMESPACE
clusterfly/CHANGELOG
clusterfly/NEWS
clusterfly/R
clusterfly/R/hulls.r
clusterfly/R/som.r
clusterfly/R/model-based.r
clusterfly/R/hclust.r
clusterfly/R/sysdata.rda
clusterfly/R/ellipsoid.r
clusterfly/R/utils.r
clusterfly/R/som-iteration.r
clusterfly/R/clusterfly.r
clusterfly/R/data.r
clusterfly/R/extract.r
clusterfly/R/ggplot.r
clusterfly/MD5
clusterfly/DESCRIPTION
clusterfly/man
clusterfly/man/hierfly.Rd
clusterfly/man/olive_example.Rd
clusterfly/man/ggobi.hierfly.Rd
clusterfly/man/cfly_show.Rd
clusterfly/man/mefly.Rd
clusterfly/man/ellipse.Rd
clusterfly/man/clarify.Rd
clusterfly/man/clusterfly.Rd
clusterfly/man/cut.hierfly.Rd
clusterfly/man/cfly_dist.Rd
clusterfly/man/cfly_fluct.Rd
clusterfly/man/hierarchical.Rd
clusterfly/man/as.data.frame.clusterfly.Rd
clusterfly/man/cfly_cluster.Rd
clusterfly/man/cfly_pcp.Rd
clusterfly/man/clusters.Rd
clusterfly/man/ggobi.som.Rd
clusterfly/man/addhull.Rd
clusterfly/man/cfly_clarify.Rd
clusterfly/man/cfly_animate.Rd
clusterfly/LICENSE