cmf-methods: Methods for cmf results lists

In cmfilter: Coordinate-Wise Mediation Filter

Description

Plotting, summarising, and printing cmf objects

Usage

## S3 method for class 'cmf'
plot(x, select, line = TRUE, labelSelected = TRUE,
  defaultColour = "#00008b", highlightColour = "#e2bd36", ...)

## S3 method for class 'cmf'
screeplot(x, topn, ...)

## S3 method for class 'cmf'
summary(object, ...)

## S3 method for class 'cmf'
print(x, ...)

Arguments

x	cmf object
select	optional selection vector of variables to show
line	whether to show a line at the chosen cutoff
labelSelected	whether to label the selected mediators in the plot, not used when fewer than 20 bars are shown.
defaultColour	the colour for the bars lower than the cutoff
highlightColour	the colour for the bars of the selected mediators
...	other arguments passed to barplot and summary
topn	only show the top n mediators
object	cmf object

See Also

cmf

Examples

# generate some data
dat <- generateMed(a = (1:10)/20, b = (1:10)/20)
res <- cmf(dat)
# screeplot of the result
screeplot(res)
# manhattan style plot the result
plot(res)

cmfilter documentation built on April 11, 2019, 5:07 p.m.