coarseDataTools: A Collection of Functions to Help with Analysis of Coarsely Observed Data

Functions to analyze coarse data. Specifically, it contains functions to (1) fit parametric accelerated failure time models to interval-censored survival time data, and (2) estimate the case-fatality ratio in scenarios with under-reporting. This package's development was motivated by applications to infectious disease: in particular, problems with estimating the incubation period and the case fatality ratio of a given disease. Sample data files are included in the package.

AuthorNicholas G. Reich <nick@schoolph.umass.edu>, Justin Lessler <jlessler@jhsph.edu>, Andrew Azman <andrewazman@gmail.com>
Date of publication2016-03-12 00:15:41
MaintainerNicholas G. Reich <nick@schoolph.umass.edu>
LicenseGPL (>= 2)
Version0.6-3
http://cran.r-project.org/package=coarseDataTools

View on CRAN

Functions

cd.fit Man page
cd.fit-class Man page
cd.fit.mcmc Man page
cd.fit.mcmc-class Man page
dic.fit Man page
dic.fit.mcmc Man page
EMforCFR Man page
exp.win.lengths Man page
fluA.inc.per Man page
generate.coarse.data Man page
get.obs.type Man page
logLik Man page
logLik,cd.fit-method Man page
loglikhd Man page
mcmc.erlang Man page
mcmcpack.ll Man page
nycH1N1 Man page
plot Man page
plot,cd.fit-method Man page
precision.simulation Man page
precision.simulation.coarse Man page
precision.simulation.exact Man page
simulated.outbreak.deaths Man page

Files

coarseDataTools
coarseDataTools/inst
coarseDataTools/inst/CITATION
coarseDataTools/inst/doc
coarseDataTools/inst/doc/CFR_vignette.pdf
coarseDataTools/inst/doc/CFR_vignette.Rnw
coarseDataTools/inst/doc/CFR_vignette.R
coarseDataTools/NAMESPACE
coarseDataTools/data
coarseDataTools/data/fluA.inc.per.rda
coarseDataTools/data/nycH1N1.rda
coarseDataTools/data/exp.win.lengths.rda
coarseDataTools/data/simulated.outbreak.deaths.rda
coarseDataTools/R
coarseDataTools/R/dic.fit.R coarseDataTools/R/S4stuff.R coarseDataTools/R/coarseDataTools-package.R coarseDataTools/R/CFR_estimation.R coarseDataTools/R/sampleSizeSimulation.R coarseDataTools/R/get.obs.type.R coarseDataTools/R/dic.fit.mcmc.R
coarseDataTools/vignettes
coarseDataTools/vignettes/CFR_vignette.Rnw
coarseDataTools/README.md
coarseDataTools/MD5
coarseDataTools/build
coarseDataTools/build/vignette.rds
coarseDataTools/DESCRIPTION
coarseDataTools/ChangeLog
coarseDataTools/man
coarseDataTools/man/fluA.inc.per.Rd coarseDataTools/man/plot-methods.Rd coarseDataTools/man/nycH1N1.Rd coarseDataTools/man/dic.fit.Rd coarseDataTools/man/mcmc.erlang.Rd coarseDataTools/man/simulated.outbreak.deaths.Rd coarseDataTools/man/mcmcpack.ll.Rd coarseDataTools/man/cd.fit.mcmc.Rd coarseDataTools/man/dic.fit.mcmc.Rd coarseDataTools/man/cd.fit.Rd coarseDataTools/man/loglikhd.Rd coarseDataTools/man/EMforCFR.Rd coarseDataTools/man/exp.win.lengths.Rd coarseDataTools/man/logLik-methods.Rd coarseDataTools/man/precision.simulation.Rd coarseDataTools/man/get.obs.type.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.