| .add_cluster_borders |
Man page
Source code
|
| .add_cluster_labels |
Man page
Source code
|
| .add_heatmap_values |
Man page
Source code
|
| .add_pathway_nodes |
Source code
|
| .add_shadow |
Source code
|
| .annotate_or_halo |
Source code
|
| .as_mcml |
Man page
Source code
|
| .auto_detect_clusters |
Man page
Source code
|
| .blob_base_plot |
Source code
|
| .blob_default_colors |
Source code
|
| .blob_default_linetypes |
Source code
|
| .blob_layout |
Source code
|
| .build_cluster_lookup |
Man page
Source code
|
| .build_edge_diff_chord |
Source code
|
| .build_edge_diff_circular |
Source code
|
| .build_edge_diff_linear |
Source code
|
| .build_edge_diff_tile |
Source code
|
| .build_filter_env |
Source code
|
| .build_flow_polygons |
Source code
|
| .build_forest_plot |
Source code
|
| .build_from_transitions |
Man page
Source code
|
| .build_grouped_radial_plot |
Source code
|
| .build_heatmap_base |
Man page
Source code
|
| .build_higher_order |
Source code
|
| .build_hon_label_map |
Source code
|
| .build_mcml_edgelist |
Man page
Source code
|
| .build_mcml_sequence |
Man page
Source code
|
| .build_ml_cells |
Man page
Source code
|
| .build_ml_connections |
Man page
Source code
|
| .build_ml_labels |
Man page
Source code
|
| .build_ml_shells |
Man page
Source code
|
| .build_node_rects |
Source code
|
| .build_radial_forest_plot |
Source code
|
| .build_triad_lookup |
Source code
|
| .calculate_node_positions |
Source code
|
| .chord_compute_chords |
Source code
|
| .chord_compute_segments |
Source code
|
| .chord_default_palette |
Source code
|
| .chord_draw_labels |
Source code
|
| .chord_draw_ribbon |
Source code
|
| .chord_draw_segment |
Source code
|
| .chord_draw_ticks |
Source code
|
| .chord_extract_matrix |
Source code
|
| .chord_format_tick |
Source code
|
| .chord_nice_interval |
Source code
|
| .chord_resolve_colors |
Source code
|
| .chord_resolve_labels |
Source code
|
| .classify_triads_vectorized |
Source code
|
| .collect_dispatch_args |
Source code
|
| .compute_centrality_vars |
Source code
|
| .compute_lazy_centralities |
Source code
|
| .compute_lazy_context |
Source code
|
| .compute_lazy_edge_metrics |
Source code
|
| .compute_modularity |
Man page
Source code
|
| .compute_single_centrality |
Source code
|
| .compute_single_edge_metric |
Source code
|
| .convert_to_format |
Source code
|
| .count_triads_matrix_vectorized |
Source code
|
| .create_bezier_ribbon |
Source code
|
| .create_cograph_network |
Man page
Source code
|
| .darken_colors |
Source code
|
| .decode_tna_data |
Man page
Source code
|
| .default_transition_palette |
Source code
|
| .detect_actor_column |
Source code
|
| .detect_input_class |
Source code
|
| .detect_mcml_input |
Man page
Source code
|
| .detect_needed_edge_variables |
Source code
|
| .detect_needed_variables |
Source code
|
| .detect_order_column |
Source code
|
| .disparity_filter_matrix |
Man page
Source code
|
| .draw_closed_arrow |
Source code
|
| .draw_intra_arc |
Man page
Source code
|
| .draw_intra_group_edges |
Man page
Source code
|
| .edgelist_to_trans_array |
Source code
|
| .edges_from_weight_matrix |
Source code
|
| .empty_cograph_network |
Source code
|
| .evaluate_filter_conditions |
Source code
|
| .expand_repeated_nodes |
Source code
|
| .extract_blob_states |
Source code
|
| .extract_hon_pathways |
Source code
|
| .extract_hypa_pathways |
Source code
|
| .extract_inits |
Man page
Source code
|
| .extract_ml_layers |
Man page
Source code
|
| .extract_sequence_data |
Source code
|
| .extract_tna_transitions |
Source code
|
| .extract_weights |
Man page
Source code
|
| .forest_df_boot_glasso |
Source code
|
| .forest_df_edge_diff |
Source code
|
| .forest_df_net_bootstrap |
Source code
|
| .forest_df_tna_bootstrap |
Source code
|
| .generate_random_graph |
Source code
|
| .get_man_descriptions |
Source code
|
| .get_motif_names |
Source code
|
| .get_pattern_filters |
Source code
|
| .get_tna_initialize_model |
Source code
|
| .get_triad_lookup |
Source code
|
| .get_triad_patterns_canonical |
Source code
|
| .get_triad_patterns_visual |
Source code
|
| .grid_arrow |
Source code
|
| .group_tna_to_mcml |
Man page
Source code
|
| .heatmap_theme |
Man page
Source code
|
| .matrix_to_long |
Man page
Source code
|
| .matrix_to_trans_df |
Source code
|
| .motif_census_undirected |
Source code
|
| .motifs_ggplot_theme |
Source code
|
| .normalize_clusters |
Man page
Source code
|
| .onLoad |
Source code
|
| .p_stars |
Source code
|
| .parse_pathway_string |
Source code
|
| .parse_pathways |
Source code
|
| .plot_combined_pathways |
Source code
|
| .plot_compare_all_pairs |
Man page
Source code
|
| .plot_heatmap_clustered |
Man page
Source code
|
| .plot_heatmap_group_tna |
Man page
Source code
|
| .plot_heatmap_single |
Man page
Source code
|
| .plot_individual_tracks |
Source code
|
| .plot_motif_patterns |
Source code
|
| .plot_motifs_bar |
Source code
|
| .plot_motifs_heatmap |
Source code
|
| .plot_motifs_network |
Source code
|
| .plot_single_pathway |
Source code
|
| .plot_transitions_multi |
Source code
|
| .plot_triad_networks |
Source code
|
| .process_weights |
Man page
Source code
|
| .resolve_colors |
Man page
Source code
|
| .resolve_ml_colors |
Man page
Source code
|
| .resolve_weights |
Man page
Source code
|
| .restore_rng |
Source code
|
| .save_rng |
Source code
|
| .select_by_component |
Source code
|
| .select_by_expression |
Source code
|
| .select_by_index |
Source code
|
| .select_by_name |
Source code
|
| .select_by_neighbors |
Source code
|
| .select_by_top |
Source code
|
| .select_edges_between |
Source code
|
| .select_edges_bridges |
Source code
|
| .select_edges_by_expression |
Source code
|
| .select_edges_involving |
Source code
|
| .select_edges_mutual |
Source code
|
| .select_edges_top |
Source code
|
| .shape_to_pch |
Source code
|
| .simplify_tna_edges |
Source code
|
| .smooth_blob |
Source code
|
| .split_state_tokens |
Source code
|
| .subset_cograph_network |
Source code
|
| .text_or_halo |
Source code
|
| .tna_style_defaults |
Man page
Source code
|
| .transform_to_plane |
Man page
Source code
|
| .translate_qgraph_dots |
Man page
Source code
|
| .update_cograph_edges |
Source code
|
| .wrap_communities |
Man page
Source code
|
| COGRAPH_SCALE |
Man page
|
| COGRAPH_SCALE_LEGACY |
Man page
|
| CographLayout |
Man page
|
| CographNetwork |
Man page
|
| CographTheme |
Man page
|
| QGRAPH_SCALE |
Man page
|
| `%||%` |
Source code
|
| abbrev_label |
Man page
Source code
|
| adjust_alpha |
Source code
|
| adjust_brightness |
Source code
|
| aes-edges |
Man page
|
| aes-nodes |
Man page
|
| aes-scales |
Man page
|
| aggregate_duplicate_edges |
Man page
Source code
|
| aggregate_layers |
Man page
Source code
|
| aggregate_weights |
Man page
Source code
|
| ai_coding |
Man page
|
| ai_detailed |
Man page
|
| apply_igraph_layout |
Source code
|
| apply_igraph_layout_by_name |
Source code
|
| arrow_base_midpoint |
Man page
Source code
|
| arrow_head_points |
Man page
Source code
|
| arrow_points |
Man page
Source code
|
| arrow_radius |
Man page
Source code
|
| as_cograph |
Man page
Source code
|
| as_mcml |
Man page
Source code
|
| as_mcml.cluster_summary |
Man page
Source code
|
| as_mcml.default |
Man page
Source code
|
| as_mcml.group_tna |
Man page
Source code
|
| as_mcml.mcml |
Man page
Source code
|
| as_tna |
Man page
Source code
|
| as_tna.cluster_summary |
Man page
Source code
|
| as_tna.default |
Man page
Source code
|
| as_tna.mcml |
Man page
Source code
|
| atan2_usr |
Man page
Source code
|
| bezier_points |
Man page
Source code
|
| brain_vertices |
Man page
Source code
|
| build_edge_labels_from_template |
Man page
Source code
|
| build_mcml |
Man page
Source code
|
| calculate_current_flow_betweenness |
Source code
|
| calculate_current_flow_closeness |
Source code
|
| calculate_diffusion |
Source code
|
| calculate_kreach |
Source code
|
| calculate_laplacian |
Source code
|
| calculate_leverage |
Source code
|
| calculate_load |
Source code
|
| calculate_measure |
Source code
|
| calculate_percolation |
Source code
|
| calculate_voterank |
Source code
|
| cent_to_edge |
Man page
Source code
|
| centrality |
Man page
Source code
|
| centrality_alpha |
Man page
Source code
|
| centrality_authority |
Man page
Source code
|
| centrality_betweenness |
Man page
Source code
|
| centrality_closeness |
Man page
Source code
|
| centrality_constraint |
Man page
Source code
|
| centrality_coreness |
Man page
Source code
|
| centrality_current_flow_betweenness |
Man page
Source code
|
| centrality_current_flow_closeness |
Man page
Source code
|
| centrality_degree |
Man page
Source code
|
| centrality_diffusion |
Man page
Source code
|
| centrality_eccentricity |
Man page
Source code
|
| centrality_eigenvector |
Man page
Source code
|
| centrality_harmonic |
Man page
Source code
|
| centrality_hub |
Man page
Source code
|
| centrality_incloseness |
Man page
Source code
|
| centrality_indegree |
Man page
Source code
|
| centrality_ineccentricity |
Man page
Source code
|
| centrality_inharmonic |
Man page
Source code
|
| centrality_instrength |
Man page
Source code
|
| centrality_kreach |
Man page
Source code
|
| centrality_laplacian |
Man page
Source code
|
| centrality_leverage |
Man page
Source code
|
| centrality_load |
Man page
Source code
|
| centrality_outcloseness |
Man page
Source code
|
| centrality_outdegree |
Man page
Source code
|
| centrality_outeccentricity |
Man page
Source code
|
| centrality_outharmonic |
Man page
Source code
|
| centrality_outstrength |
Man page
Source code
|
| centrality_pagerank |
Man page
Source code
|
| centrality_percolation |
Man page
Source code
|
| centrality_power |
Man page
Source code
|
| centrality_strength |
Man page
Source code
|
| centrality_subgraph |
Man page
Source code
|
| centrality_transitivity |
Man page
Source code
|
| centrality_voterank |
Man page
Source code
|
| check_duplicate_edges |
Man page
Source code
|
| circle_vertices |
Man page
Source code
|
| cloud_vertices |
Man page
Source code
|
| cluster_network |
Man page
|
| cluster_quality |
Man page
Source code
|
| cluster_significance |
Man page
Source code
|
| cluster_summary |
Man page
Source code
|
| cnet |
Man page
|
| coding |
Man page
|
| coding_detailed |
Man page
|
| cograph |
Man page
Source code
|
| cograph-main |
Man page
|
| cograph-package |
Man page
|
| color_communities |
Man page
Source code
|
| com_consensus |
Man page
|
| com_eb |
Man page
|
| com_fg |
Man page
|
| com_fl |
Man page
|
| com_im |
Man page
|
| com_ld |
Man page
|
| com_le |
Man page
|
| com_lp |
Man page
|
| com_lv |
Man page
|
| com_op |
Man page
|
| com_sg |
Man page
|
| com_wt |
Man page
|
| communities |
Man page
Source code
|
| community_consensus |
Man page
Source code
|
| community_edge_betweenness |
Man page
Source code
|
| community_fast_greedy |
Man page
Source code
|
| community_fluid |
Man page
Source code
|
| community_infomap |
Man page
Source code
|
| community_label_propagation |
Man page
Source code
|
| community_leading_eigenvector |
Man page
Source code
|
| community_leiden |
Man page
Source code
|
| community_louvain |
Man page
Source code
|
| community_optimal |
Man page
Source code
|
| community_sizes |
Man page
Source code
|
| community_spinglass |
Man page
Source code
|
| community_walktrap |
Man page
Source code
|
| compare_communities |
Man page
Source code
|
| compute_adaptive_esize |
Man page
Source code
|
| compute_circular_layout |
Man page
Source code
|
| compute_connectivity_jitter_horizontal |
Man page
Source code
|
| compute_connectivity_jitter_vertical |
Man page
Source code
|
| compute_edge_curvatures |
Man page
Source code
|
| compute_layout_for_cograph |
Source code
|
| compute_layout_gephi_fr |
Man page
Source code
|
| compute_plot_limits |
Man page
Source code
|
| compute_polygon_layout |
Man page
Source code
|
| contrast_text_color |
Source code
|
| cqual |
Man page
|
| create_edges_df |
Man page
Source code
|
| create_grid_grob |
Man page
Source code
|
| create_nodes_df |
Man page
Source code
|
| cross_vertices |
Man page
Source code
|
| csig |
Man page
|
| csum |
Man page
|
| curve_control_point |
Man page
Source code
|
| degree_distribution |
Man page
Source code
|
| detect_communities |
Man page
Source code
|
| detect_duplicate_edges |
Man page
Source code
|
| diamond_vertices |
Man page
Source code
|
| disparity |
Man page
|
| disparity_filter |
Man page
Source code
|
| disparity_filter.cograph_network |
Man page
Source code
|
| disparity_filter.default |
Man page
Source code
|
| disparity_filter.igraph |
Man page
Source code
|
| disparity_filter.matrix |
Man page
Source code
|
| disparity_filter.tna |
Man page
Source code
|
| draw_arrow_base |
Man page
Source code
|
| draw_brain |
Man page
Source code
|
| draw_chip |
Man page
Source code
|
| draw_chip_node_base |
Man page
Source code
|
| draw_circle |
Man page
Source code
|
| draw_circle_arrow_base |
Man page
Source code
|
| draw_cloud |
Man page
Source code
|
| draw_cross |
Man page
Source code
|
| draw_curve_with_start_segment |
Man page
Source code
|
| draw_curved_arrow_base |
Man page
Source code
|
| draw_curved_edge |
Man page
Source code
|
| draw_curved_edge_base |
Man page
Source code
|
| draw_database |
Man page
Source code
|
| draw_database_node_base |
Man page
Source code
|
| draw_diamond |
Man page
Source code
|
| draw_donut |
Man page
Source code
|
| draw_donut_node_base |
Man page
Source code
|
| draw_donut_pie |
Man page
Source code
|
| draw_donut_pie_node_base |
Man page
Source code
|
| draw_double_donut_pie |
Man page
Source code
|
| draw_double_donut_pie_node_base |
Man page
Source code
|
| draw_edge_label_base |
Man page
Source code
|
| draw_ellipse |
Man page
Source code
|
| draw_gear |
Man page
Source code
|
| draw_heart |
Man page
Source code
|
| draw_hexagon |
Man page
Source code
|
| draw_network |
Man page
Source code
|
| draw_network_node_base |
Man page
Source code
|
| draw_neural |
Man page
Source code
|
| draw_neural_node_base |
Man page
Source code
|
| draw_node_base |
Man page
Source code
|
| draw_node_label_base |
Man page
Source code
|
| draw_open_arrow_base |
Man page
Source code
|
| draw_pentagon |
Man page
Source code
|
| draw_pie |
Man page
Source code
|
| draw_pie_node_base |
Man page
Source code
|
| draw_polygon_donut |
Man page
Source code
|
| draw_polygon_donut_node_base |
Man page
Source code
|
| draw_polygon_donut_pie_node_base |
Man page
Source code
|
| draw_robot |
Man page
Source code
|
| draw_robot_node_base |
Man page
Source code
|
| draw_self_loop |
Man page
Source code
|
| draw_self_loop_base |
Man page
Source code
|
| draw_square |
Man page
Source code
|
| draw_star |
Man page
Source code
|
| draw_straight_edge |
Man page
Source code
|
| draw_straight_edge_base |
Man page
Source code
|
| draw_svg_shape |
Man page
Source code
|
| draw_svg_shape_base |
Man page
Source code
|
| draw_triangle |
Man page
Source code
|
| edge_betweenness |
Man page
Source code
|
| edge_centrality |
Man page
Source code
|
| edge_endpoint |
Man page
Source code
|
| ellipse_vertices |
Man page
Source code
|
| ensure_cograph_network |
Source code
|
| expand_param |
Man page
Source code
|
| extract_interlayer |
Man page
|
| extract_layer |
Man page
|
| extract_motifs |
Man page
Source code
|
| extract_triads |
Man page
Source code
|
| filter_edges |
Man page
Source code
|
| filter_edges_by_weight |
Man page
Source code
|
| filter_nodes |
Man page
Source code
|
| find_curve_split_index |
Man page
Source code
|
| fontface_to_numeric |
Man page
Source code
|
| fontface_to_string |
Man page
Source code
|
| format_ci_range |
Man page
Source code
|
| format_edge_label_template |
Man page
Source code
|
| format_pvalue |
Man page
Source code
|
| from_qgraph |
Man page
Source code
|
| from_tna |
Man page
Source code
|
| gear_vertices |
Man page
Source code
|
| get_data |
Man page
Source code
|
| get_donut_base_vertices |
Man page
Source code
|
| get_edge_label_position |
Man page
Source code
|
| get_edge_list |
Man page
Source code
|
| get_edge_order |
Man page
Source code
|
| get_edges |
Man page
Source code
|
| get_groups |
Man page
Source code
|
| get_labels |
Man page
Source code
|
| get_layout |
Man page
Source code
|
| get_meta |
Man page
Source code
|
| get_node_order |
Man page
Source code
|
| get_nodes |
Man page
Source code
|
| get_palette |
Source code
|
| get_scale_constants |
Man page
Source code
|
| get_shape |
Man page
Source code
|
| get_shape_vertices |
Man page
Source code
|
| get_significance_stars |
Man page
Source code
|
| get_source |
Man page
Source code
|
| get_svg_shape |
Man page
Source code
|
| get_template_from_style |
Man page
Source code
|
| get_theme |
Man page
Source code
|
| get_x_scale |
Man page
Source code
|
| get_y_scale |
Man page
Source code
|
| ggplot_robustness |
Man page
Source code
|
| globals |
Man page
|
| hai_datasets |
Man page
|
| handle_deprecated_param |
Man page
Source code
|
| heart_vertices |
Man page
Source code
|
| hexagon_vertices |
Man page
Source code
|
| htna |
Man page
|
| human_ai |
Man page
|
| human_ai_detailed |
Man page
|
| in_to_usr_x |
Man page
Source code
|
| in_to_usr_y |
Man page
Source code
|
| init_registries |
Man page
Source code
|
| input-edgelist |
Man page
|
| input-igraph |
Man page
|
| input-matrix |
Man page
|
| input-parse |
Man page
|
| input-qgraph |
Man page
|
| input-statnet |
Man page
|
| input-tna |
Man page
|
| inset_polygon_vertices |
Man page
Source code
|
| interpolate_colors |
Source code
|
| is_cograph_network |
Man page
Source code
|
| is_cograph_theme |
Man page
Source code
|
| is_directed |
Man page
Source code
|
| is_symmetric_matrix |
Man page
Source code
|
| is_tna_network |
Man page
Source code
|
| label_abbrev |
Man page
|
| lagg |
Man page
|
| layer_degree_correlation |
Man page
Source code
|
| layer_similarity |
Man page
Source code
|
| layer_similarity_matrix |
Man page
Source code
|
| layout-circle |
Man page
|
| layout-groups |
Man page
|
| layout-oval |
Man page
|
| layout-registry |
Man page
|
| layout-spring |
Man page
|
| layout_circle |
Man page
Source code
|
| layout_gephi_fr |
Man page
Source code
|
| layout_groups |
Man page
Source code
|
| layout_oval |
Man page
Source code
|
| layout_spring |
Man page
Source code
|
| ldegcor |
Man page
|
| list_layouts |
Man page
Source code
|
| list_palettes |
Man page
Source code
|
| list_shapes |
Man page
Source code
|
| list_svg_shapes |
Man page
Source code
|
| list_themes |
Man page
Source code
|
| lsim |
Man page
|
| lsim_matrix |
Man page
|
| map_edge_colors |
Man page
Source code
|
| map_node_colors |
Man page
Source code
|
| map_qgraph_lty |
Man page
Source code
|
| map_qgraph_shape |
Man page
Source code
|
| map_to_colors |
Source code
|
| mcml |
Man page
Source code
|
| membership.cograph_communities |
Man page
Source code
|
| methods-plot |
Man page
|
| methods-print |
Man page
|
| mlna |
Man page
|
| modularity.cograph_communities |
Man page
Source code
|
| motif_census |
Man page
Source code
|
| motifs |
Man page
Source code
|
| mtna |
Man page
|
| n_communities |
Man page
Source code
|
| n_edges |
Man page
Source code
|
| n_nodes |
Man page
Source code
|
| network_bridges |
Man page
Source code
|
| network_clique_size |
Man page
Source code
|
| network_cut_vertices |
Man page
Source code
|
| network_girth |
Man page
Source code
|
| network_global_efficiency |
Man page
Source code
|
| network_local_efficiency |
Man page
Source code
|
| network_radius |
Man page
Source code
|
| network_rich_club |
Man page
Source code
|
| network_small_world |
Man page
Source code
|
| network_summary |
Man page
Source code
|
| network_to_igraph |
Source code
|
| network_vertex_connectivity |
Man page
Source code
|
| nodes |
Man page
Source code
|
| normalize_coords |
Source code
|
| offset_point |
Man page
Source code
|
| output-save |
Man page
|
| overlay_communities |
Man page
Source code
|
| palette_blues |
Man page
Source code
|
| palette_colorblind |
Man page
Source code
|
| palette_diverging |
Man page
Source code
|
| palette_pastel |
Man page
Source code
|
| palette_rainbow |
Man page
Source code
|
| palette_reds |
Man page
Source code
|
| palette_viridis |
Man page
Source code
|
| palettes |
Man page
|
| parse_edgelist |
Source code
|
| parse_group_tna |
Source code
|
| parse_igraph |
Source code
|
| parse_input |
Man page
Source code
|
| parse_matrix |
Source code
|
| parse_qgraph |
Source code
|
| parse_statnet |
Source code
|
| parse_svg |
Man page
Source code
|
| parse_tna |
Source code
|
| pentagon_vertices |
Man page
Source code
|
| perp_mid |
Man page
Source code
|
| plot-bootstrap |
Man page
|
| plot-compare |
Man page
|
| plot-heatmap |
Man page
|
| plot-nestimate |
Man page
|
| plot-permutation |
Man page
|
| plot-transitions |
Man page
|
| plot.cograph_cluster_significance |
Man page
Source code
|
| plot.cograph_communities |
Man page
Source code
|
| plot.cograph_motif_analysis |
Man page
Source code
|
| plot.cograph_motif_result |
Man page
Source code
|
| plot.cograph_motifs |
Man page
Source code
|
| plot.cograph_network |
Man page
Source code
|
| plot.netobject_group |
Man page
Source code
|
| plot.netobject_ml |
Man page
Source code
|
| plot.tna_disparity |
Man page
Source code
|
| plot_alluvial |
Man page
Source code
|
| plot_bootstrap_forest |
Man page
Source code
|
| plot_bootstrap_forest.boot_glasso |
Man page
Source code
|
| plot_bootstrap_forest.net_bootstrap |
Man page
Source code
|
| plot_bootstrap_forest.net_bootstrap_group |
Man page
Source code
|
| plot_bootstrap_forest.tna_bootstrap |
Man page
Source code
|
| plot_chord |
Man page
Source code
|
| plot_compare |
Man page
Source code
|
| plot_comparison_heatmap |
Man page
Source code
|
| plot_edge_diff_forest |
Man page
Source code
|
| plot_edge_diff_forest.boot_glasso |
Man page
Source code
|
| plot_group_permutation |
Man page
Source code
|
| plot_heatmap |
Man page
Source code
|
| plot_htna |
Man page
Source code
|
| plot_mcml |
Man page
Source code
|
| plot_mixed_network |
Man page
Source code
|
| plot_ml_heatmap |
Man page
Source code
|
| plot_mlna |
Man page
Source code
|
| plot_mtna |
Man page
Source code
|
| plot_netobject_group |
Man page
Source code
|
| plot_netobject_ml |
Man page
Source code
|
| plot_permutation |
Man page
Source code
|
| plot_robustness |
Man page
Source code
|
| plot_simplicial |
Man page
Source code
|
| plot_tna |
Man page
Source code
|
| plot_trajectories |
Man page
Source code
|
| plot_transitions |
Man page
Source code
|
| point_angle |
Man page
Source code
|
| point_distance |
Man page
Source code
|
| point_on_circle |
Man page
Source code
|
| print.cluster_quality |
Source code
|
| print.cluster_summary |
Source code
|
| print.cograph_cluster_significance |
Source code
|
| print.cograph_communities |
Man page
Source code
|
| print.cograph_motif_analysis |
Source code
|
| print.cograph_motif_result |
Source code
|
| print.cograph_motifs |
Source code
|
| print.cograph_network |
Man page
Source code
|
| print.mcml |
Source code
|
| print.tna_disparity |
Source code
|
| qgraph_arrow_size |
Man page
Source code
|
| qgraph_cent2edge |
Man page
Source code
|
| qgraph_cent_to_edge_simple |
Man page
Source code
|
| qgraph_default_esize |
Man page
Source code
|
| qgraph_default_vsize |
Man page
Source code
|
| qgraph_norm_curve |
Man page
Source code
|
| qgraph_plot_info |
Man page
Source code
|
| qgraph_scale_edge_widths |
Man page
Source code
|
| qgraph_vsize_to_user |
Man page
Source code
|
| rectangle_vertices |
Man page
Source code
|
| recycle_to_length |
Man page
Source code
|
| register_builtin_layouts |
Man page
Source code
|
| register_builtin_palettes |
Man page
Source code
|
| register_builtin_shapes |
Man page
Source code
|
| register_builtin_themes |
Man page
Source code
|
| register_layout |
Man page
Source code
|
| register_palette |
Source code
|
| register_shape |
Man page
Source code
|
| register_svg_shape |
Man page
Source code
|
| register_theme |
Man page
Source code
|
| regular_polygon_vertices |
Man page
Source code
|
| render-edges |
Man page
|
| render-ggplot |
Man page
|
| render-grid |
Man page
|
| render-nodes |
Man page
|
| render_edge_labels_grid |
Man page
Source code
|
| render_edges_base |
Man page
Source code
|
| render_edges_grid |
Man page
Source code
|
| render_edges_splot |
Man page
Source code
|
| render_legend_grid |
Man page
Source code
|
| render_legend_splot |
Man page
Source code
|
| render_node_labels_grid |
Man page
Source code
|
| render_nodes_base |
Man page
Source code
|
| render_nodes_grid |
Man page
Source code
|
| render_nodes_splot |
Man page
Source code
|
| rescale_layout |
Man page
Source code
|
| resolve_aesthetic |
Man page
Source code
|
| resolve_centrality_sizes |
Man page
Source code
|
| resolve_donut_params |
Man page
Source code
|
| resolve_edge_colors |
Man page
Source code
|
| resolve_edge_labels |
Man page
Source code
|
| resolve_edge_styles |
Man page
Source code
|
| resolve_edge_widths |
Man page
Source code
|
| resolve_label_sizes |
Man page
Source code
|
| resolve_labels |
Man page
Source code
|
| resolve_loop_rotation |
Man page
Source code
|
| resolve_node_colors |
Man page
Source code
|
| resolve_node_sizes |
Man page
Source code
|
| resolve_shapes |
Man page
Source code
|
| resolve_stars |
Man page
Source code
|
| robustness |
Man page
Source code
|
| robustness_auc |
Man page
Source code
|
| robustness_edge_attack |
Man page
Source code
|
| robustness_summary |
Man page
Source code
|
| robustness_vertex_attack |
Man page
Source code
|
| scale-constants |
Man page
|
| scale_alpha |
Man page
Source code
|
| scale_color |
Man page
Source code
|
| scale_color_discrete |
Man page
Source code
|
| scale_edge_widths |
Man page
Source code
|
| scale_edge_widths_simple |
Man page
Source code
|
| scale_node_sizes |
Man page
Source code
|
| scale_size |
Man page
Source code
|
| scale_width |
Man page
Source code
|
| select_bridges |
Man page
Source code
|
| select_component |
Man page
Source code
|
| select_edges |
Man page
Source code
|
| select_edges_between |
Man page
Source code
|
| select_edges_involving |
Man page
Source code
|
| select_neighbors |
Man page
Source code
|
| select_nodes |
Man page
Source code
|
| select_top |
Man page
Source code
|
| select_top_edges |
Man page
Source code
|
| set_edges |
Man page
Source code
|
| set_groups |
Man page
Source code
|
| set_layout |
Man page
Source code
|
| set_nodes |
Man page
Source code
|
| shapes-basic |
Man page
|
| shapes-registry |
Man page
|
| shapes-special |
Man page
|
| shapes-svg |
Man page
|
| shorten_edge_for_arrow |
Man page
Source code
|
| simplify |
Man page
Source code
|
| simplify.cograph_network |
Man page
Source code
|
| simplify.default |
Man page
Source code
|
| simplify.igraph |
Man page
Source code
|
| simplify.matrix |
Man page
Source code
|
| simplify.tna |
Man page
Source code
|
| sn_edges |
Man page
Source code
|
| sn_ggplot |
Man page
Source code
|
| sn_layout |
Man page
Source code
|
| sn_nodes |
Man page
Source code
|
| sn_palette |
Man page
Source code
|
| sn_render |
Man page
|
| sn_save |
Man page
Source code
|
| sn_save_ggplot |
Man page
Source code
|
| sn_theme |
Man page
Source code
|
| sonplot-qgraph-geometry |
Man page
|
| soplot |
Man page
Source code
|
| splot |
Man page
Source code
|
| splot-arrows |
Man page
|
| splot-edges |
Man page
|
| splot-geometry |
Man page
|
| splot-labels |
Man page
|
| splot-nodes |
Man page
|
| splot-params |
Man page
|
| splot-polygons |
Man page
|
| splot.boot_glasso |
Man page
Source code
|
| splot.group_tna_permutation |
Man page
Source code
|
| splot.net_bootstrap |
Man page
Source code
|
| splot.net_permutation |
Man page
Source code
|
| splot.netobject |
Man page
Source code
|
| splot.tna_bootstrap |
Man page
Source code
|
| splot.tna_disparity |
Man page
Source code
|
| splot.tna_permutation |
Man page
Source code
|
| splot.wtna_mixed |
Man page
Source code
|
| splot_angle |
Man page
Source code
|
| square_vertices |
Man page
Source code
|
| star_vertices |
Man page
Source code
|
| student_interactions |
Man page
|
| subgraphs |
Man page
Source code
|
| subset_edges |
Man page
|
| subset_nodes |
Man page
|
| summarize_network |
Man page
Source code
|
| summary.cograph_network |
Man page
Source code
|
| supra |
Man page
|
| supra_adjacency |
Man page
Source code
|
| supra_interlayer |
Man page
Source code
|
| supra_layer |
Man page
Source code
|
| theme_cograph_classic |
Man page
Source code
|
| theme_cograph_colorblind |
Man page
Source code
|
| theme_cograph_dark |
Man page
Source code
|
| theme_cograph_gray |
Man page
Source code
|
| theme_cograph_minimal |
Man page
Source code
|
| theme_cograph_nature |
Man page
Source code
|
| theme_cograph_viridis |
Man page
Source code
|
| themes-builtin |
Man page
|
| themes-registry |
Man page
|
| tna_color_palette |
Man page
Source code
|
| to_adjacency_matrix |
Source code
|
| to_cograph |
Man page
Source code
|
| to_data_frame |
Man page
Source code
|
| to_df |
Man page
Source code
|
| to_igraph |
Man page
Source code
|
| to_matrix |
Man page
Source code
|
| to_network |
Man page
Source code
|
| tplot |
Man page
|
| triad_census |
Man page
Source code
|
| triangle_vertices |
Man page
Source code
|
| unregister_svg_shape |
Man page
Source code
|
| usr_to_in_x |
Man page
Source code
|
| usr_to_in_y |
Man page
Source code
|
| utils-colors |
Man page
|
| utils-deprecation |
Man page
|
| utils-geometry |
Man page
|
| utils-globals |
Man page
|
| utils-validation |
Man page
|
| validate_choice |
Man page
Source code
|
| validate_color |
Man page
Source code
|
| validate_length |
Man page
Source code
|
| validate_network |
Man page
Source code
|
| validate_range |
Man page
Source code
|
| verify_igraph |
Man page
|
| verify_with_igraph |
Man page
Source code
|
| wagg |
Man page
|
| zzz |
Man page
|
