API for cograph
Analysis and Visualization of Complex Networks

Global functions
.add_cluster_borders Source code
.add_cluster_labels Source code
.add_directed_pathway_nodes Source code
.add_heatmap_values Source code
.add_pathway_nodes Source code
.add_shadow Source code
.add_text_with_halo Source code
.aggregate_edges_by_group Source code
.align_matrix Source code
.align_node_table Source code
.aligned_p_difference Source code
.annotate_or_halo Source code
.apply_splot_metadata_weight Source code
.as_directed_matrix Source code
.as_mcml Source code
.auto_detect_clusters Source code
.blend_colors Source code
.blob_base_plot Source code
.blob_default_colors Source code
.blob_default_linetypes Source code
.blob_layout Source code
.build_cluster_lookup Source code
.build_edge_diff_chord Source code
.build_edge_diff_circular Source code
.build_edge_diff_linear Source code
.build_edge_diff_tile Source code
.build_filter_env Source code
.build_flow_polygons Source code
.build_forest_plot Source code
.build_from_transitions Source code
.build_grouped_radial_plot Source code
.build_heatmap_base Source code
.build_higher_order Source code
.build_hon_label_map Source code
.build_incoming Source code
.build_mcml_edgelist Source code
.build_mcml_sequence Source code
.build_ml_cells Source code
.build_ml_connections Source code
.build_ml_labels Source code
.build_ml_node_labels Source code
.build_ml_shells Source code
.build_node_rects Source code
.build_radial_forest_plot Source code
.build_triad_lookup Source code
.calculate_node_positions Source code
.cc_dumbbell_n Source code
.cc_facet Source code
.cc_grouped Source code
.cc_line Source code
.cc_pyramid Source code
.cc_pyramid_dispatch Source code
.cc_stacked Source code
.centrality_df Source code
.centrality_long Source code
.cg_access_information Source code
.cg_accumulate Source code
.cg_adaptive_leaderrank Source code
.cg_adj_distinct Source code
.cg_adj_la Source code
.cg_adjlist Source code
.cg_agglomeration Source code
.cg_alpha Source code
.cg_alr_hindex Source code
.cg_argmax_tied Source code
.cg_articulation_points Source code
.cg_as_context Source code
.cg_asymmetric_weights Source code
.cg_attr_matrix Source code
.cg_average_distance Source code
.cg_barrat_transitivity Source code
.cg_barycenter Source code
.cg_betweenness Source code
.cg_betweenness_batched Source code
.cg_binary Source code
.cg_boolean_irreducible Source code
.cg_bottleneck Source code
.cg_bridge_product Source code
.cg_bridges Source code
.cg_bridging Source code
.cg_brokerage Source code
.cg_candidate_adjacency Source code
.cg_candidate_radius Source code
.cg_cda Source code
.cg_centroid Source code
.cg_check_ira_args Source code
.cg_closeness Source code
.cg_closeness_vitality Source code
.cg_clusterrank Source code
.cg_cmp_epsilon Source code
.cg_collective_influence Source code
.cg_comm_centrality Source code
.cg_communicability Source code
.cg_communicability_betweenness Source code
.cg_community_based Source code
.cg_community_hub_bridge Source code
.cg_community_input Source code
.cg_community_links Source code
.cg_community_mediator Source code
.cg_component_labels Source code
.cg_components_numbered Source code
.cg_constraint Source code
.cg_context Source code
.cg_coreness Source code
.cg_coreness_loops Source code
.cg_costly_measures Source code
.cg_cross_clique Source code
.cg_current_flow_betweenness Source code
.cg_current_flow_closeness Source code
.cg_decay Source code
.cg_degree Source code
.cg_degree_discount Source code
.cg_delegable_measures Source code
.cg_delta_betweenness Source code
.cg_delta_closeness Source code
.cg_diameter Source code
.cg_diffusion Source code
.cg_dijkstra Source code
.cg_dil_terms Source code
.cg_distance_entropy Source code
.cg_distances Source code
.cg_diversity Source code
.cg_dk_index Source code
.cg_dmnc Source code
.cg_dominant_index Source code
.cg_dynamical_importance Source code
.cg_dynamics_sensitive Source code
.cg_eccentricity Source code
.cg_edge_betweenness Source code
.cg_edge_betweenness_rows Source code
.cg_edge_betweenness_structure Source code
.cg_edge_indicator Source code
.cg_edge_rows Source code
.cg_effective_size Source code
.cg_ego_betweenness Source code
.cg_ego_mask Source code
.cg_eigenvector Source code
.cg_enrenew Source code
.cg_entropy Source code
.cg_entropy_of Source code
.cg_entropy_variation Source code
.cg_entropy_variation_degree Source code
.cg_epc Source code
.cg_exogenous Source code
.cg_expected Source code
.cg_expected_influence Source code
.cg_expm_eigen Source code
.cg_extended_coreness Source code
.cg_extended_gravity Source code
.cg_finite_diffusion Source code
.cg_flow_coefficient Source code
.cg_flow_inverse Source code
.cg_floyd_warshall Source code
.cg_focal_ego_credit Source code
.cg_fragmentation Source code
.cg_fuzzy_local_dimension Source code
.cg_gateway Source code
.cg_geodesic_counts Source code
.cg_geodesic_kpath Source code
.cg_gilschmidt Source code
.cg_global_structure Source code
.cg_global_transitivity Source code
.cg_graph Source code
.cg_graph_from_matrix Source code
.cg_graph_regularization Source code
.cg_graph_source Source code
.cg_gravity Source code
.cg_gravity_auto_radius Source code
.cg_gravity_mass Source code
.cg_h_of Source code
.cg_harary Source code
.cg_harmonic Source code
.cg_hcc_terms Source code
.cg_heatmap Source code
.cg_hide_information Source code
.cg_hindex Source code
.cg_hindex_strength Source code
.cg_hits Source code
.cg_hop_distances Source code
.cg_hop_matrix Source code
.cg_hubbell Source code
.cg_igraph Source code
.cg_improved_closeness Source code
.cg_improved_node_contraction Source code
.cg_infection Source code
.cg_information Source code
.cg_integration Source code
.cg_katz Source code
.cg_ked_terms Source code
.cg_knn Source code
.cg_kpath_counts Source code
.cg_kreach Source code
.cg_lac Source code
.cg_laplacian Source code
.cg_laplacian_matrix Source code
.cg_laplacian_pinv Source code
.cg_largest_component Source code
.cg_leaderrank Source code
.cg_length_scaled_betweenness Source code
.cg_leverage Source code
.cg_lhc_terms Source code
.cg_lin Source code
.cg_line_graph Source code
.cg_lnc_terms Source code
.cg_load Source code
.cg_lobby Source code
.cg_local_bridging Source code
.cg_local_candidates Source code
.cg_local_dimension Source code
.cg_local_dimension_fixed Source code
.cg_local_efficiency Source code
.cg_local_entropy Source code
.cg_local_hindex Source code
.cg_local_information_dimension Source code
.cg_local_transitivity Source code
.cg_local_volume_dimension Source code
.cg_loop_coreness Source code
.cg_lower_is_central Source code
.cg_malatya Source code
.cg_map_flow Source code
.cg_matrix_source Source code
.cg_mcc Source code
.cg_mcgm_eigenvector Source code
.cg_mdd Source code
.cg_membership_measures Source code
.cg_memo Source code
.cg_mfpt Source code
.cg_mnc Source code
.cg_mode_measures Source code
.cg_mode_neighbours Source code
.cg_mode_weights Source code
.cg_modularity Source code
.cg_modularity_vitality Source code
.cg_n_components Source code
.cg_na_negative Source code
.cg_nb_walk_sums Source code
.cg_ncvoterank Source code
.cg_need_igraph Source code
.cg_neighborhood_connectivity Source code
.cg_neighbors Source code
.cg_no_mode_measures Source code
.cg_node_contraction Source code
.cg_nonbacktracking Source code
.cg_offdiag Source code
.cg_ols_slope Source code
.cg_onion Source code
.cg_original_weights Source code
.cg_pagerank Source code
.cg_pairwisedis Source code
.cg_participation Source code
.cg_path_matrix Source code
.cg_peel_threshold Source code
.cg_percolation Source code
.cg_power Source code
.cg_prestige_domain Source code
.cg_radiality Source code
.cg_random_walk_decay Source code
.cg_rank_score Source code
.cg_re_constraint Source code
.cg_re_context Source code
.cg_re_destructiveness Source code
.cg_re_distribution Source code
.cg_re_index Source code
.cg_re_negative_default Source code
.cg_re_vocabulary Source code
.cg_reach_closure Source code
.cg_reaching_local Source code
.cg_reaching_weighted Source code
.cg_reciprocated Source code
.cg_redundancy Source code
.cg_renewed_coreness Source code
.cg_residual_closeness Source code
.cg_resistance_curvature Source code
.cg_resolve_direction Source code
.cg_resource_mass Source code
.cg_resource_matrix Source code
.cg_resource_settle Source code
.cg_resource_steps Source code
.cg_ring_counts Source code
.cg_rsp_terms Source code
.cg_rumor Source code
.cg_s_core Source code
.cg_s_shell Source code
.cg_salsa Source code
.cg_search_information Source code
.cg_semilocal Source code
.cg_shapley Source code
.cg_shapley_exact Source code
.cg_shell_stage Source code
.cg_solve_or_stop Source code
.cg_sp_dag Source code
.cg_sp_node_counts Source code
.cg_spanning_tree Source code
.cg_stationary Source code
.cg_strength Source code
.cg_stress Source code
.cg_strong_components Source code
.cg_subgraph Source code
.cg_support Source code
.cg_tarjan Source code
.cg_tier_guard Source code
.cg_topological_coefficient Source code
.cg_tpr_relative_change Source code
.cg_tpr_similarity Source code
.cg_tpr_support Source code
.cg_tpr_terms Source code
.cg_triangle_counts Source code
.cg_trophic_level Source code
.cg_truss Source code
.cg_two_way_rw Source code
.cg_undirected_view Source code
.cg_unit_max Source code
.cg_volume Source code
.cg_voterank Source code
.cg_voterank_plus Source code
.cg_weighted_h_index Source code
.cg_weighted_kshell Source code
.cg_weighted_leaderrank Source code
.cg_weighted_measures Source code
.cg_weighted_view Source code
.cg_wiener Source code
.cg_within_module_z Source code
.cg_wvoterank Source code
.check_count Source code
.check_finite_weights Source code
.check_named_expressions Source code
.check_not_structural Source code
.check_scalar_number Source code
.chord_compute_chords Source code
.chord_compute_segments Source code
.chord_default_palette Source code
.chord_draw_labels Source code
.chord_draw_ribbon Source code
.chord_draw_segment Source code
.chord_draw_ticks Source code
.chord_extract_matrix Source code
.chord_format_tick Source code
.chord_nice_interval Source code
.chord_resolve_colors Source code
.chord_resolve_labels Source code
.classify_triads_vectorized Source code
.clear_current_visual_scale Source code
.collect_dispatch_args Source code
.combine_arcs Source code
.compute_centrality_vars Source code
.compute_degree_breaks Source code
.compute_delegated_centrality Source code
.compute_global_efficiency Source code
.compute_lazy_centralities Source code
.compute_lazy_context Source code
.compute_lazy_edge_metrics Source code
.compute_modularity Source code
.compute_node_predicate Source code
.compute_phi Source code
.compute_single_centrality Source code
.compute_single_edge_metric Source code
.connected_nodes Source code
.contrast_text_color Source code
.contrasting_text_color Source code
.convert_to_format Source code
.copy_aes_to_r6 Source code
.count_triad_types Source code
.count_triads_matrix_vectorized Source code
.count_undirected_triads Source code
.cp_continuous Source code
.cp_discrete_fitness Source code
.cp_discrete_refine Source code
.create_bezier_ribbon Source code
.create_cograph_network Source code
.darken_colors Source code
.decode_tna_data Source code
.default_transition_palette Source code
.degree_assortativity_directed Source code
.degree_assortativity_undirected Source code
.degree_bar_labels Source code
.degree_density Source code
.detect_actor_column Source code
.detect_input_class Source code
.detect_mcml_input Source code
.detect_needed_edge_variables Source code
.detect_needed_variables Source code
.detect_order_column Source code
.df_to_incidence Source code
.direction_arrow_polys Source code
.disc_polygon Source code
.disparity_filter_matrix Source code
.draw_closed_arrow Source code
.draw_intra_arc Source code
.draw_intra_group_edges Source code
.drop_zero_edges Source code
.edge_key Source code
.edge_keys Source code
.edge_vocabulary Source code
.edgelist_to_trans_array Source code
.edges_as_df Source code
.edges_from_weight_matrix Source code
.empty_cograph_network Source code
.evaluate_filter_conditions Source code
.evaluate_mutations Source code
.expand_repeated_nodes Source code
.ext_adjlist Source code
.ext_bridging_coefficient Source code
.ext_context Source code
.ext_default_weights Source code
.ext_dijkstra_parents Source code
.ext_edge_count Source code
.ext_incident_costs Source code
.ext_mfpt Source code
.ext_path_matrix Source code
.ext_reaching_weighted Source code
.ext_stress_weighted Source code
.ext_weights Source code
.extract_association_pathways Source code
.extract_blob_states Source code
.extract_hon_pathways Source code
.extract_hypa_pathways Source code
.extract_inits Source code
.extract_link_prediction_pathways Source code
.extract_ml_layers Source code
.extract_mogen_transitions_pathways Source code
.extract_node_colors Source code
.extract_sequence_data Source code
.extract_simplicial_pathways Source code
.extract_tna_transitions Source code
.extract_weights Source code
.finish_result Source code
.fit_exponential Source code
.fit_geometric Source code
.fit_poisson Source code
.fit_power_law Source code
.forest_df_boot_glasso Source code
.forest_df_edge_diff Source code
.forest_df_net_bootstrap Source code
.forest_df_tna_bootstrap Source code
.freeman_centralization Source code
.generate_random_graph Source code
.get_current_visual_scale Source code
.get_edge_id Source code
.get_man_descriptions Source code
.get_motif_names Source code
.get_pattern_filters Source code
.get_splot_metadata Source code
.get_tna_initialize_model Source code
.get_triad_lookup Source code
.get_triad_patterns_canonical Source code
.get_triad_patterns_visual Source code
.grid_arrow Source code
.group_betweenness Source code
.group_closeness Source code
.group_degree Source code
.group_tna_to_mcml Source code
.heatmap_theme Source code
.identity_visual_scale Source code
.is_bipartite_bfs Source code
.is_network_splot_renderer Source code
.is_tna_sequence_data Source code
.keep_rounded_zero_edges Source code
.legend_band_lines Source code
.legend_overflows Source code
.make_fit_result Source code
.matrix_to_long Source code
.matrix_to_trans_df Source code
.mcml_expanded_macro Source code
.mcml_expanded_via_nestimate Source code
.mcml_refined_partition Source code
.mcml_resolve_expand Source code
.mcml_top_layer_y Source code
.merge_splot_metadata_defaults Source code
.mirror_triangle Source code
.ml_label_margin Source code
.ml_layer_spacing Source code
.motif_census_replicate Source code
.motif_census_undirected Source code
.motif_check_replicates Source code
.motif_configuration_stubs Source code
.motif_drop_na_z_rows Source code
.motif_null_stats Source code
.motif_rng_streams Source code
.motif_run_replicates Source code
.motif_strip_loops Source code
.motif_triad_pair_bins Source code
.motif_triad_pair_counts Source code
.motif_unit_matrix Source code
.motif_validate_cores Source code
.motif_z_rank Source code
.motifs_ggplot_theme Source code
.need_igraph Source code
.network_from_matrix Source code
.network_weight_matrix Source code
.node_filter_vars Source code
.node_vocabulary Source code
.nominal_assortativity Source code
.normalize_by_measure Source code
.normalize_clusters Source code
.onLoad Source code
.oob_squish Source code
.p_stars Source code
.parse_pathway_string Source code
.parse_pathways Source code
.path_distance Source code
.pick_palette Source code
.plot_centrality_bars Source code
.plot_centrality_line Source code
.plot_centrality_line_facet Source code
.plot_combined_pathways Source code
.plot_compare_all_pairs Source code
.plot_cumulative_degree Source code
.plot_heatmap_clustered Source code
.plot_heatmap_group_tna Source code
.plot_heatmap_single Source code
.plot_histogram_degree Source code
.plot_individual_tracks Source code
.plot_motif_patterns Source code
.plot_motifs_bar Source code
.plot_motifs_heatmap Source code
.plot_motifs_network Source code
.plot_rich_club_curve Source code
.plot_rich_club_network Source code
.plot_single_pathway Source code
.plot_transitions_multi Source code
.plot_triad_networks Source code
.pretty_measure Source code
.prim_forest Source code
.process_weights Source code
.project_binary Source code
.project_cosine Source code
.project_jaccard Source code
.project_newman Source code
.project_sum Source code
.psych_style_defaults Source code
.pw_is_ordered Source code
.pw_members Source code
.pw_target Source code
.rbind_fill Source code
.rebuild_network Source code
.rebuild_tna Source code
.recycle_to Source code
.reindex_network Source code
.render_legend_base Source code
.render_legend_in_band Source code
.rescale_minmax Source code
.resolve_colors Source code
.resolve_deprecated_arg Source code
.resolve_group_membership Source code
.resolve_ml_colors Source code
.resolve_mlvar_type Source code
.resolve_node_colors Source code
.resolve_node_selection Source code
.resolve_node_selection_ordered Source code
.resolve_nodes Source code
.resolve_path_weights Source code
.resolve_splot_metadata_renderer Source code
.resolve_temporal_input Source code
.resolve_visual_scale Source code
.resolve_weights Source code
.restore_rng Source code
.ring_sector_polys Source code
.save_rng Source code
.scalar_assortativity Source code
.scale_by Source code
.scale_by_total Source code
.scale_margin Source code
.select_by_component Source code
.select_by_expression Source code
.select_by_index Source code
.select_by_name Source code
.select_by_neighbors Source code
.select_by_top Source code
.select_edges_between Source code
.select_edges_bridges Source code
.select_edges_by_expression Source code
.select_edges_involving Source code
.select_edges_mutual Source code
.select_edges_top Source code
.set_current_visual_scale Source code
.set_dimnames Source code
.shape_to_pch Source code
.simplicial_legend_grob Source code
.simplify_tna_edges Source code
.smooth_blob Source code
.split_state_tokens Source code
.splot_edges_matrix_index Source code
.splot_metadata_defaults Source code
.splot_metadata_renderer_name Source code
.step_shade Source code
.stop_bad_selection Source code
.subgraph_density Source code
.subset_cograph_network Source code
.target_saqr_extract Source code
.temporal_node_fill Source code
.text_or_halo Source code
.theme_centrality Source code
.threshold_target_count Source code
.tna_style_defaults Source code
.top_by_score Source code
.transform_to_plane Source code
.translate_qgraph_dots Source code
.triad_edge_indicators Source code
.triad_edge_weights Source code
.triad_indices Source code
.triad_type_index Source code
.triad_type_names Source code
.trophic_levels_from_adjacency Source code
.unwrap_saved_layout Source code
.update_cograph_edges Source code
.validate_edge_metric Source code
.validate_indices Source code
.validate_layout_coords Source code
.validate_measure Source code
.validate_motif_repetitions Source code
.warn_cancelled_edges Source code
.warn_new_isolates Source code
.within_cluster_tnas Source code
.wrap_communities Source code
.zscore_by_measure Source code
CographLayout Man page
CographNetwork Man page
CographTheme Man page
`%||%` Source code
abbrev_label Man page Source code
add_edges Man page Source code
add_nodes Man page Source code
adjust_alpha Source code
adjust_brightness Source code
aes-edges Man page
aes-nodes Man page
aggregate_duplicate_edges Source code
aggregate_layers Man page Source code
aggregate_weights Man page Source code
ai_coding Man page
ai_detailed Man page
apply_igraph_layout Source code
apply_igraph_layout_by_name Source code
arrow_base_midpoint Source code
arrow_head_points Source code
arrow_points Source code
arrow_radius Source code
as.data.frame.cograph_motif_result Man page Source code
as.data.frame.cograph_network Man page Source code
as_cograph Man page Source code
as_mcml Man page Source code
as_mcml.cluster_summary Man page Source code
as_mcml.default Man page Source code
as_mcml.group_tna Man page Source code
as_mcml.mcml Man page Source code
as_tna Man page Source code
as_tna.cluster_summary Man page Source code
as_tna.default Man page Source code
as_tna.mcml Man page Source code
assortativity Man page Source code
assortativity_attribute Man page Source code
atan2_usr Source code
bezier_points Source code
binarize Man page Source code
bind_networks Man page Source code
brain_vertices Source code
build_edge_labels_from_template Source code
calculate_adaptive_leaderrank Source code
calculate_average_distance Source code
calculate_barycenter Source code
calculate_beta_measure Source code
calculate_bottleneck Source code
calculate_bridging Source code
calculate_bridging_capital Source code
calculate_brokerage Source code
calculate_candidate_local Source code
calculate_candidate_structure Source code
calculate_cda Source code
calculate_centroid Source code
calculate_closeness_vitality Source code
calculate_clustering_onnela Source code
calculate_clusterrank Source code
calculate_coleman_theil Source code
calculate_collective_influence Source code
calculate_comm_centrality Source code
calculate_communicability Source code
calculate_communicability_betweenness Source code
calculate_community_based Source code
calculate_community_hub_bridge Source code
calculate_community_mediator Source code
calculate_controlrank Source code
calculate_cross_clique Source code
calculate_current_flow_betweenness Source code
calculate_current_flow_closeness Source code
calculate_dangalchev Source code
calculate_decay Source code
calculate_degree_discount Source code
calculate_delta_betweenness Source code
calculate_delta_closeness Source code
calculate_diffusion Source code
calculate_diffusion_power_series Source code
calculate_dil Source code
calculate_distance_entropy Source code
calculate_diversity Source code
calculate_dkgm Source code
calculate_dmnc Source code
calculate_dynamical_importance Source code
calculate_dynamics_sensitive Source code
calculate_effective_size Source code
calculate_ego_betweenness Source code
calculate_ehcc Source code
calculate_enrenew Source code
calculate_entropy Source code
calculate_entropy_variation Source code
calculate_epc Source code
calculate_exogenous Source code
calculate_expected Source code
calculate_expected_force Source code
calculate_expected_influence Source code
calculate_extended_core Source code
calculate_finite_diffusion Source code
calculate_flow_betweenness Source code
calculate_flow_coefficient Source code
calculate_fragmentation Source code
calculate_fuzzy_local_dimension Source code
calculate_gateway Source code
calculate_generalized_closeness Source code
calculate_geodesic_kpath Source code
calculate_gilschmidt Source code
calculate_global_structure Source code
calculate_graph_regularization Source code
calculate_gravity Source code
calculate_harary Source code
calculate_hcc Source code
calculate_heatmap Source code
calculate_hindex_strength Source code
calculate_hubbell Source code
calculate_iec Source code
calculate_iira Source code
calculate_improved_closeness Source code
calculate_infection Source code
calculate_information Source code
calculate_integration Source code
calculate_ira Source code
calculate_katz Source code
calculate_ked Source code
calculate_kpath Source code
calculate_kreach Source code
calculate_lac Source code
calculate_laplacian Source code
calculate_leaderrank Source code
calculate_length_scaled_betweenness Source code
calculate_leverage Source code
calculate_lhc Source code
calculate_lin Source code
calculate_linerank Source code
calculate_lnc Source code
calculate_load Source code
calculate_lobby Source code
calculate_local_bridging Source code
calculate_local_dimension Source code
calculate_local_dimension_fixed Source code
calculate_local_efficiency Source code
calculate_local_entropy Source code
calculate_local_hindex Source code
calculate_local_information_dimension Source code
calculate_local_volume_dimension Source code
calculate_localized_bridging Source code
calculate_malatya Source code
calculate_map_equation Source code
calculate_markov Source code
calculate_mcgm Source code
calculate_measure Source code
calculate_mixed_gravity Source code
calculate_mnc Source code
calculate_modularity_vitality Source code
calculate_ncvoterank Source code
calculate_neighbor_distance Source code
calculate_neighborhood_connectivity Source code
calculate_ninl Source code
calculate_node_contraction Source code
calculate_nonbacktracking Source code
calculate_onion Source code
calculate_pairwisedis Source code
calculate_participation Source code
calculate_percolation Source code
calculate_prestige_domain Source code
calculate_prestige_domain_proximity Source code
calculate_proximal_betweenness Source code
calculate_radiality Source code
calculate_random_walk Source code
calculate_random_walk_decay Source code
calculate_reaching_local Source code
calculate_redundancy Source code
calculate_relative_entropy Source code
calculate_renewed_coreness Source code
calculate_residual_closeness Source code
calculate_resistance_curvature Source code
calculate_rsp_betweenness Source code
calculate_rumor Source code
calculate_s_core Source code
calculate_s_shell Source code
calculate_salsa Source code
calculate_search_information Source code
calculate_second_order Source code
calculate_semilocal Source code
calculate_shapley Source code
calculate_spanning_tree Source code
calculate_spectralrank Source code
calculate_stress Source code
calculate_topological_coefficient Source code
calculate_transitivity Source code
calculate_trophic_level Source code
calculate_trust_pagerank Source code
calculate_two_way_rw Source code
calculate_voterank Source code
calculate_voterank_plus Source code
calculate_weighted_h_index Source code
calculate_weighted_kshell Source code
calculate_weighted_leaderrank Source code
calculate_wiener Source code
calculate_within_module_z Source code
calculate_wvoterank Source code
calculate_x_degree Source code
cent_to_edge Source code
centrality Man page Source code
centrality_access_information Man page Source code
centrality_adaptive_leaderrank Man page Source code
centrality_alpha Man page Source code
centrality_authority Man page Source code
centrality_average_distance Man page Source code
centrality_barycenter Man page Source code
centrality_beta_measure Man page Source code
centrality_betweenness Man page Source code
centrality_bottleneck Man page Source code
centrality_bridging Man page Source code
centrality_bridging_capital Man page Source code
centrality_bridging_coefficient Man page Source code
centrality_brokerage_coordinator Man page Source code
centrality_brokerage_gatekeeper Man page Source code
centrality_brokerage_itinerant Man page Source code
centrality_brokerage_liaison Man page Source code
centrality_brokerage_representative Man page Source code
centrality_cda Man page Source code
centrality_centroid Man page Source code
centrality_closeness Man page Source code
centrality_closeness_vitality Man page Source code
centrality_clusterrank Man page Source code
centrality_coleman_theil Man page Source code
centrality_comm_centrality Man page Source code
centrality_communicability Man page Source code
centrality_communicability_betweenness Man page Source code
centrality_community_based Man page Source code
centrality_community_hub_bridge Man page Source code
centrality_community_mediator Man page Source code
centrality_constraint Man page Source code
centrality_controlrank Man page Source code
centrality_coreness Man page Source code
centrality_cross_clique Man page Source code
centrality_current_flow_betweenness Man page Source code
centrality_current_flow_closeness Man page Source code
centrality_dangalchev Man page Source code
centrality_decay Man page Source code
centrality_degree Man page Source code
centrality_degree_discount Man page Source code
centrality_delta_betweenness Man page Source code
centrality_delta_closeness Man page Source code
centrality_diffusion Man page Source code
centrality_diffusion_centrality Man page Source code
centrality_dil Man page Source code
centrality_distance_entropy Man page Source code
centrality_diversity Man page Source code
centrality_dkgm Man page Source code
centrality_dmnc Man page Source code
centrality_dynamical_importance Man page Source code
centrality_dynamics_sensitive Man page Source code
centrality_eccentricity Man page Source code
centrality_effective_size Man page Source code
centrality_ego_betweenness Man page Source code
centrality_ehcc Man page Source code
centrality_eigenvector Man page Source code
centrality_enrenew Man page Source code
centrality_entropy Man page Source code
centrality_entropy_variation Man page Source code
centrality_epc Man page Source code
centrality_exogenous Man page Source code
centrality_expected Man page Source code
centrality_expected_force Man page Source code
centrality_expected_influence_1 Man page Source code
centrality_expected_influence_2 Man page Source code
centrality_extended_coreness Man page Source code
centrality_extended_gravity Man page Source code
centrality_extended_local_bridging Man page Source code
centrality_extended_mixed_gravity Man page Source code
centrality_flow_betweenness Man page Source code
centrality_flow_coefficient Man page Source code
centrality_fragmentation Man page Source code
centrality_fuzzy_local_dimension Man page Source code
centrality_gateway Man page Source code
centrality_generalized_closeness Man page Source code
centrality_geodesic_kpath Man page Source code
centrality_gilschmidt Man page Source code
centrality_global_structure Man page Source code
centrality_godfather Man page Source code
centrality_graph_regularization Man page Source code
centrality_gravity Man page Source code
centrality_harary Man page Source code
centrality_harmonic Man page Source code
centrality_hcc Man page Source code
centrality_heatmap Man page Source code
centrality_hide_information Man page Source code
centrality_hub Man page Source code
centrality_hubbell Man page Source code
centrality_hybrid_global_structure Man page Source code
centrality_iec Man page Source code
centrality_iira Man page Source code
centrality_improved_closeness Man page Source code
centrality_improved_global_structure Man page Source code
centrality_incloseness Man page Source code
centrality_indegree Man page Source code
centrality_ineccentricity Man page Source code
centrality_information Man page Source code
centrality_inharmonic Man page Source code
centrality_instrength Man page Source code
centrality_integration Man page Source code
centrality_ira Man page Source code
centrality_katz Man page Source code
centrality_ked Man page Source code
centrality_kpath Man page Source code
centrality_kreach Man page Source code
centrality_lac Man page Source code
centrality_laplacian Man page Source code
centrality_leaderrank Man page Source code
centrality_length_scaled_betweenness Man page Source code
centrality_leverage Man page Source code
centrality_lhc Man page Source code
centrality_lin Man page Source code
centrality_linerank Man page Source code
centrality_lnc Man page Source code
centrality_load Man page Source code
centrality_lobby Man page Source code
centrality_local_bridging Man page Source code
centrality_local_dimension Man page Source code
centrality_local_dimension_fixed Man page Source code
centrality_local_efficiency Man page Source code
centrality_local_entropy Man page Source code
centrality_local_information_dimension Man page Source code
centrality_local_volume_dimension Man page Source code
centrality_localized_bridging Man page Source code
centrality_malatya Man page Source code
centrality_map_equation Man page Source code
centrality_markov Man page Source code
centrality_mcc Man page Source code
centrality_mcgm Man page Source code
centrality_mdd Man page Source code
centrality_mixed_gravity Man page Source code
centrality_mnc Man page Source code
centrality_modified_expected_force Man page Source code
centrality_modularity_vitality Man page Source code
centrality_ncvoterank Man page Source code
centrality_neighbor_distance Man page Source code
centrality_neighborhood_connectivity Man page Source code
centrality_ninl Man page Source code
centrality_node_contraction Man page Source code
centrality_node_contraction_improved Man page Source code
centrality_outcloseness Man page Source code
centrality_outdegree Man page Source code
centrality_outeccentricity Man page Source code
centrality_outharmonic Man page Source code
centrality_outstrength Man page Source code
centrality_pagerank Man page Source code
centrality_pairwisedis Man page Source code
centrality_participation Man page Source code
centrality_percolation Man page Source code
centrality_power Man page Source code
centrality_prestige_domain Man page Source code
centrality_prestige_domain_proximity Man page Source code
centrality_proximal_betweenness Man page Source code
centrality_radiality Man page Source code
centrality_random_walk Man page Source code
centrality_random_walk_decay Man page Source code
centrality_reaching_local Man page Source code
centrality_redundancy Man page Source code
centrality_relative_entropy Man page Source code
centrality_renewed_coreness Man page Source code
centrality_residual_closeness Man page Source code
centrality_resistance_curvature Man page Source code
centrality_rsp_betweenness Man page Source code
centrality_rumor Man page Source code
centrality_s_core Man page Source code
centrality_s_shell Man page Source code
centrality_salsa Man page Source code
centrality_semilocal Man page Source code
centrality_shapley_game1 Man page Source code
centrality_shapley_game2 Man page Source code
centrality_shapley_game3 Man page Source code
centrality_single_discount Man page Source code
centrality_spectralrank Man page Source code
centrality_strength Man page Source code
centrality_stress Man page Source code
centrality_subgraph Man page Source code
centrality_support Man page Source code
centrality_topological_coefficient Man page Source code
centrality_transitivity Man page Source code
centrality_truss Man page Source code
centrality_trust_pagerank Man page Source code
centrality_two_way_rw Man page Source code
centrality_volume Man page Source code
centrality_voterank Man page Source code
centrality_voterank_plus Man page Source code
centrality_weighted_h_index Man page Source code
centrality_weighted_kshell Man page Source code
centrality_weighted_leaderrank Man page Source code
centrality_wiener Man page Source code
centrality_within_module_z Man page Source code
centrality_wvoterank Man page Source code
centrality_x_degree Man page Source code
centralization Man page Source code
check_duplicate_edges Source code
circle_vertices Source code
cloud_vertices Source code
cluster_quality Man page Source code
cluster_significance Man page Source code
cnet Man page
coding Man page
coding_detailed Man page
cograph Man page Source code
cograph-main Man page
cograph-package Man page
color_communities Man page Source code
com_consensus Man page
com_eb Man page
com_fg Man page
com_fl Man page
com_im Man page
com_ld Man page
com_le Man page
com_lp Man page
com_lv Man page
com_op Man page
com_sg Man page
com_wt Man page
communities Man page Source code
community_consensus Man page Source code
community_edge_betweenness Man page Source code
community_fast_greedy Man page Source code
community_fluid Man page Source code
community_infomap Man page Source code
community_label_propagation Man page Source code
community_leading_eigenvector Man page Source code
community_leiden Man page Source code
community_louvain Man page Source code
community_optimal Man page Source code
community_sizes Man page Source code
community_spinglass Man page Source code
community_walktrap Man page Source code
compare_communities Man page Source code
complement_network Man page Source code
compute_adaptive_esize Source code
compute_circular_layout Source code
compute_connectivity_jitter_horizontal Source code
compute_connectivity_jitter_vertical Source code
compute_edge_curvatures Source code
compute_layout_for_cograph Source code
compute_layout_gephi_fr Source code
compute_plot_limits Source code
compute_polygon_layout Source code
compute_visual_scale Source code
contract_nodes Man page Source code
contrast_text_color Source code
core_periphery Man page Source code
cqual Man page
create_edges_df Source code
create_grid_grob Source code
create_nodes_df Source code
cross_vertices Source code
csig Man page
csum Man page Source code
curve_control_point Source code
degree_distribution Man page Source code
detect_communities Man page Source code
detect_duplicate_edges Source code
diamond_vertices Source code
disparity_filter Man page Source code
disparity_filter.cograph_network Man page Source code
disparity_filter.default Man page Source code
disparity_filter.igraph Man page Source code
disparity_filter.matrix Man page Source code
disparity_filter.tna Man page Source code
dispersion Man page Source code
draw_arrow_base Source code
draw_brain Source code
draw_chip Source code
draw_chip_node_base Source code
draw_circle Source code
draw_circle_arrow_base Source code
draw_cloud Source code
draw_cross Source code
draw_curve_with_start_segment Source code
draw_curved_arrow_base Source code
draw_curved_edge Source code
draw_curved_edge_base Source code
draw_database Source code
draw_database_node_base Source code
draw_diamond Source code
draw_donut Source code
draw_donut_node_base Source code
draw_donut_pie Source code
draw_donut_pie_node_base Source code
draw_double_donut_pie Source code
draw_double_donut_pie_node_base Source code
draw_edge_label_base Source code
draw_ellipse Source code
draw_gear Source code
draw_heart Source code
draw_hexagon Source code
draw_network Source code
draw_network_node_base Source code
draw_neural Source code
draw_neural_node_base Source code
draw_node_base Source code
draw_node_label_base Source code
draw_open_arrow_base Source code
draw_pentagon Source code
draw_pie Source code
draw_pie_node_base Source code
draw_polygon_donut Source code
draw_polygon_donut_node_base Source code
draw_polygon_donut_pie_node_base Source code
draw_robot Source code
draw_robot_node_base Source code
draw_self_loop Source code
draw_self_loop_base Source code
draw_square Source code
draw_star Source code
draw_straight_edge Source code
draw_straight_edge_base Source code
draw_svg_shape Source code
draw_svg_shape_base Source code
draw_triangle Source code
dyad_census Man page Source code
edge_betweenness Man page Source code
edge_centrality Man page Source code
edge_endpoint Source code
edge_reciprocity Man page Source code
ego_networks Man page Source code
ellipse_vertices Source code
ensure_cograph_network Source code
estrada_index Man page Source code
expand_param Source code
extract_interlayer Man page
extract_layer Man page
extract_motifs Man page Source code
extract_triads Man page Source code
filter_edges Man page Source code
filter_edges_by_weight Source code
filter_nodes Man page Source code
find_curve_split_index Source code
fit_degree_distribution Man page Source code
fontface_to_numeric Source code
fontface_to_string Source code
format_ci_range Source code
format_edge_label_template Source code
format_pvalue Source code
from_qgraph Man page Source code
from_tna Man page Source code
gear_vertices Source code
get_data Man page Source code
get_donut_base_vertices Source code
get_edge_label_position Source code
get_edge_list Man page Source code
get_edge_order Source code
get_edges Man page Source code
get_groups Man page Source code
get_labels Man page Source code
get_layout Man page Source code
get_meta Man page Source code
get_node_order Source code
get_nodes Man page Source code
get_palette Source code
get_scale_constants Source code
get_shape Man page Source code
get_shape_vertices Source code
get_significance_stars Source code
get_source Man page Source code
get_svg_shape Source code
get_template_from_style Source code
get_theme Man page Source code
get_x_scale Source code
get_y_scale Source code
ggplot_robustness Man page Source code
group_centrality Man page Source code
hai_datasets Man page
handle_deprecated_param Source code
heart_vertices Source code
hexagon_vertices Source code
homophily Man page
htna Man page
human_ai Man page
human_ai_detailed Man page
in_to_usr_x Source code
in_to_usr_y Source code
init_registries Source code
input-edgelist Man page
input-igraph Man page
input-matrix Man page
input-qgraph Man page
input-statnet Man page
input-tna Man page
inset_polygon_vertices Source code
interpolate_colors Source code
invert_weights Man page Source code
is_bipartite Man page Source code
is_cograph_network Source code
is_cograph_theme Source code
is_directed Man page Source code
is_symmetric_matrix Source code
is_tna_network Man page Source code
k_shortest_paths Man page Source code
label_abbrev Man page
lagg Man page
layer_degree_correlation Man page Source code
layer_similarity Man page Source code
layer_similarity_matrix Man page Source code
layout-circle Man page
layout-groups Man page
layout-oval Man page
layout-spring Man page
layout-target-saqr Man page
layout_circle Man page Source code
layout_gephi_fr Source code
layout_groups Man page Source code
layout_oval Man page Source code
layout_saqr Man page Source code
layout_spring Man page Source code
layout_target Man page Source code
ldegcor Man page
list_centralities Man page Source code
list_layouts Man page Source code
list_palettes Man page Source code
list_shapes Man page Source code
list_svg_shapes Man page Source code
list_themes Man page Source code
lsim Man page
lsim_matrix Man page
map_edge_colors Source code
map_node_colors Source code
map_qgraph_lty Source code
map_qgraph_shape Source code
map_to_colors Source code
mcml Man page Source code
membership Man page Source code
methods-plot Man page
methods-print Man page
mlna Man page
modularity.cograph_communities Source code
motif_census Man page Source code
motifs Man page Source code
mtna Man page
mutate_edges Man page Source code
mutate_nodes Man page Source code
n_communities Man page Source code
n_edges Man page Source code
n_nodes Man page Source code
neighborhood_overlap Man page Source code
network_bridges Man page Source code
network_clique_size Man page Source code
network_cut_vertices Man page Source code
network_girth Man page Source code
network_global_efficiency Man page Source code
network_local_efficiency Man page Source code
network_radius Man page Source code
network_rich_club Man page Source code
network_small_world Man page Source code
network_summary Man page Source code
network_to_igraph Source code
network_vertex_connectivity Man page Source code
network_wrangling Man page
nodes Man page Source code
normalize_coords Source code
normalize_weights Man page Source code
offset_point Source code
output-save Man page
overlay_communities Man page Source code
palette_blues Man page Source code
palette_colorblind Man page Source code
palette_diverging Man page Source code
palette_pastel Man page Source code
palette_rainbow Man page Source code
palette_reds Man page Source code
palette_viridis Man page Source code
palettes Man page
panel_layout Man page Source code
parse_edgelist Source code
parse_group_tna Source code
parse_igraph Source code
parse_input Source code
parse_matrix Source code
parse_qgraph Source code
parse_statnet Source code
parse_svg Source code
parse_tna Source code
pentagon_vertices Source code
perp_mid Source code
plot.cograph_cluster_significance Man page Source code
plot.cograph_communities Man page Source code
plot.cograph_core_periphery Man page Source code
plot.cograph_degree_fit Man page Source code
plot.cograph_motif_analysis Man page Source code
plot.cograph_motif_result Man page Source code
plot.cograph_motifs Man page Source code
plot.cograph_network Man page Source code
plot.cograph_rich_club Man page Source code
plot.cograph_vulnerability Man page Source code
plot.net_bootstrap_group Man page Source code
plot.netobject_group Man page Source code
plot.netobject_ml Man page Source code
plot.tna_bootstrap Man page Source code
plot.tna_disparity Man page Source code
plot_alluvial Man page Source code
plot_bootstrap_forest Man page Source code
plot_bootstrap_forest.boot_glasso Man page Source code
plot_bootstrap_forest.net_bootstrap Man page Source code
plot_bootstrap_forest.net_bootstrap_group Man page Source code
plot_bootstrap_forest.tna_bootstrap Man page Source code
plot_centrality Man page Source code
plot_centrality_compare Man page Source code
plot_centrality_distribution Man page Source code
plot_centrality_heatmap Man page Source code
plot_chord Man page Source code
plot_compare Man page Source code
plot_comparison_heatmap Man page Source code
plot_degree_correlation Man page Source code
plot_difference Man page Source code
plot_edge_diff_forest Man page Source code
plot_edge_diff_forest.boot_glasso Man page Source code
plot_edge_weights Man page Source code
plot_group_permutation Man page Source code
plot_heatmap Man page Source code
plot_htna Man page Source code
plot_mcml Man page Source code
plot_mcml_donut Source code
plot_mixed_network Man page Source code
plot_ml_heatmap Man page Source code
plot_mlna Man page Source code
plot_mlna_donut Source code
plot_motifs Man page Source code
plot_mtna Man page Source code
plot_net_bootstrap_group Man page Source code
plot_net_stability Man page Source code
plot_netobject_group Man page Source code
plot_netobject_ml Man page Source code
plot_network_evolution Man page Source code
plot_permutation Man page Source code
plot_robustness Man page Source code
plot_simplicial Man page Source code
plot_temporal Man page Source code
plot_tna Man page Source code
plot_trajectories Man page Source code
plot_transitions Man page Source code
point_angle Source code
point_distance Source code
point_on_circle Source code
print.cg_graph Source code
print.cluster_quality Source code
print.cluster_summary Source code
print.cograph_assortativity Source code
print.cograph_cluster_significance Source code
print.cograph_communities Man page Source code
print.cograph_core_periphery Source code
print.cograph_degree_fit Man page Source code
print.cograph_dyad_census Source code
print.cograph_ego_networks Source code
print.cograph_k_paths Source code
print.cograph_motif_analysis Man page Source code
print.cograph_motif_result Man page Source code
print.cograph_motifs Man page Source code
print.cograph_network Man page Source code
print.cograph_rich_club Source code
print.cograph_vulnerability Source code
print.tna_disparity Source code
project_bipartite Man page Source code
qgraph_arrow_size Source code
qgraph_cent2edge Source code
qgraph_cent_to_edge_simple Source code
qgraph_default_esize Source code
qgraph_default_vsize Source code
qgraph_norm_curve Source code
qgraph_plot_info Source code
qgraph_scale_edge_widths Source code
qgraph_vsize_to_user Source code
reaching_global Man page Source code
rectangle_vertices Source code
recycle_to_length Source code
register_builtin_layouts Source code
register_builtin_palettes Source code
register_builtin_shapes Source code
register_builtin_themes Source code
register_layout Man page Source code
register_palette Source code
register_shape Man page Source code
register_svg_shape Man page Source code
register_theme Man page Source code
regular_polygon_vertices Source code
regulation_net Man page
remove_edges Man page Source code
remove_isolates Man page Source code
remove_nodes Man page Source code
rename_nodes Man page Source code
render-ggplot Man page
render-grid Man page
render_edge_labels_grid Source code
render_edges_base Source code
render_edges_grid Source code
render_edges_splot Source code
render_legend_grid Source code
render_legend_splot Source code
render_node_labels_grid Source code
render_nodes_base Source code
render_nodes_grid Source code
render_nodes_splot Source code
reorder_nodes Man page Source code
rescale_layout Source code
resolve_aesthetic Source code
resolve_centrality_sizes Source code
resolve_donut_params Source code
resolve_edge_colors Source code
resolve_edge_labels Source code
resolve_edge_styles Source code
resolve_edge_widths Source code
resolve_label_sizes Source code
resolve_labels Source code
resolve_loop_rotation Source code
resolve_node_colors Source code
resolve_node_sizes Source code
resolve_shapes Source code
resolve_stars Source code
reverse_edges Man page Source code
rich_club Man page Source code
rich_club_local Man page Source code
robustness Man page Source code
robustness_auc Man page Source code
robustness_edge_attack Source code
robustness_summary Man page Source code
robustness_vertex_attack Source code
scale_alpha Source code
scale_color Source code
scale_color_discrete Source code
scale_edge_widths Source code
scale_edge_widths_simple Source code
scale_node_sizes Source code
scale_size Source code
scale_width Source code
select_bridges Man page Source code
select_component Man page Source code
select_edges Man page Source code
select_edges_between Man page Source code
select_edges_involving Man page Source code
select_k_core Man page Source code
select_neighbors Man page Source code
select_nodes Man page Source code
select_top Man page Source code
select_top_edges Man page Source code
set_edges Man page Source code
set_groups Man page Source code
set_layout Man page Source code
set_nodes Man page Source code
shorten_edge_for_arrow Source code
shortest_paths Man page Source code
simmelian_strength Man page Source code
simplify Man page Source code
simplify.cograph_network Man page Source code
simplify.default Man page Source code
simplify.igraph Man page Source code
simplify.matrix Man page Source code
simplify.tna Man page Source code
sn_edges Man page Source code
sn_ggplot Man page Source code
sn_layout Man page Source code
sn_nodes Man page Source code
sn_palette Man page Source code
sn_render Man page
sn_save Man page Source code
sn_save_ggplot Man page Source code
sn_theme Man page Source code
soplot Man page Source code
spanning_tree Man page Source code
split_components Man page Source code
splot Man page Source code
splot.boot_glasso Man page Source code
splot.cograph_communities Man page Source code
splot.group_tna_permutation Man page Source code
splot.net_bootstrap Man page Source code
splot.net_mlvar Man page Source code
splot.net_permutation Man page Source code
splot.netobject Man page Source code
splot.tna_bootstrap Man page Source code
splot.tna_communities Man page Source code
splot.tna_disparity Man page Source code
splot.tna_permutation Man page Source code
splot.wtna_mixed Man page Source code
splot_angle Source code
square_vertices Source code
star_vertices Source code
student_interactions Man page
subdivide_polygon Source code
subgraphs Man page Source code
subset_edges Man page
subset_nodes Man page
summarize_clusters Man page Source code
summarize_network Man page Source code
summary.cograph_network Man page Source code
supra Man page
supra_adjacency Man page Source code
supra_interlayer Man page Source code
supra_layer Man page Source code
symmetrize Man page Source code
theme_cograph_classic Man page Source code
theme_cograph_colorblind Man page Source code
theme_cograph_dark Man page Source code
theme_cograph_gray Man page Source code
theme_cograph_minimal Man page Source code
theme_cograph_nature Man page Source code
theme_cograph_viridis Man page Source code
themes-builtin Man page
themes-registry Man page
threshold_edges Man page Source code
tna_color_palette Source code
to_adjacency_matrix Source code
to_cograph Man page Source code
to_data_frame Man page Source code
to_df Man page Source code
to_directed Man page Source code
to_igraph Man page Source code
to_matrix Man page Source code
to_network Man page Source code
to_undirected Man page Source code
tplot Man page
triad_census Man page Source code
triangle_vertices Source code
trophic_incoherence Man page Source code
unregister_svg_shape Man page Source code
usr_to_in_x Source code
usr_to_in_y Source code
validate_choice Source code
validate_color Source code
validate_length Source code
validate_network Source code
validate_range Source code
verify_igraph Man page
verify_with_igraph Man page Source code
vulnerability Man page Source code
wagg Man page
wrangle-edit Man page
wrangle-structure Man page
wrangle-weights Man page
cograph documentation built on Sept. 30, 2026, 5:08 p.m.