View source: R/centrality-batch9.R
| centrality_heatmap | R Documentation |
Five local measures.
centrality_heatmap(x, mode = "all", ...)
centrality_flow_coefficient(x, ...)
centrality_local_entropy(x, mode = "all", ...)
centrality_weighted_h_index(x, mode = "all", ...)
centrality_redundancy(x, ...)
x |
Network input (matrix, igraph, network, cograph_network, tna object). |
mode |
For directed networks: |
... |
Additional arguments passed to |
heatmap (Duron 2020)Farness minus the mean farness of
the neighbors, C(v) = f(v) - \frac{1}{k_v} \sum_{u \in N(v)}
f(u), with f the sum of hop distances to reachable nodes.
Lower is more central. Isolates score NaN. Reproduces
Table 1 of the paper.
flow_coefficient (Honey et al. 2007)Among ordered pairs of distinct neighbors, the fraction joined by a two-step path through the node but not by a direct link, as implemented in the Brain Connectivity Toolbox. On an undirected graph it equals one minus the clustering coefficient; it carries new information only on directed graphs. Nodes with fewer than two neighbors score 0.
local_entropy (Nie et al. 2016)-\sum_{j \in N(i)}
k_j \ln k_j, as printed by the sources. Always non-positive and more
negative for larger, denser neighborhoods, so lower is more
central; isolates score 0, the maximum. The original article is
closed access; the formula is that of the Zoo and of Omar and
Plapper's 2021 survey, which agree.
weighted_h_index (Gao et al. 2019)h-index of the
multiset in which each neighbor j contributes the topological
weight k_i k_j repeated k_j times. Edge weights on the
input play no role.
redundancy (Burt 1992; Borgatti 1997)Mean degree of the
node's neighbors within its ego network, 2 t_i / k_i; equal to
degree minus effective size. Higher = fewer structural holes.
Reproduces Borgatti's worked example.
heatmap, local_entropy and weighted_h_index follow
mode; the others ignore direction. Edge weights are ignored.
Named numeric vector, one value per node.
Duron, C. (2020). Heatmap centrality: A new measure to identify super- spreader nodes in scale-free networks. PLOS ONE, 15(7), e0235690.
Honey, C. J., Kotter, R., Breakspear, M., & Sporns, O. (2007). Network structure of cerebral cortex shapes functional connectivity on multiple time scales. PNAS, 104(24), 10240-10245.
Nie, T., Guo, Z., Zhao, K., & Lu, Z.-M. (2016). Using mapping entropy to identify node centrality in complex networks. Physica A, 453, 290-297.
Gao, L., Yu, S., Li, M., Shen, Z., & Gao, Z. (2019). Weighted h-index for identifying influential spreaders. Symmetry, 11(10), 1263.
Borgatti, S. P. (1997). Structural holes: Unpacking Burt's redundancy measures. Connections, 20(1), 35-38.
centrality_effective_size,
centrality_transitivity.
star5 <- matrix(0, 5, 5)
star5[1, 2:5] <- 1; star5[2:5, 1] <- 1
rownames(star5) <- colnames(star5) <- LETTERS[1:5]
centrality_heatmap(star5)
centrality_weighted_h_index(star5)
centrality_redundancy(star5)
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