splot.net_permutation: Plot Nestimate Permutation Test Results

In cograph: Analysis and Visualization of Complex Networks

Plot Nestimate Permutation Test Results

Description

Visualizes net_permutation objects from the Nestimate package. Differs from plot_permutation: p_values and effect_size are already p×p matrices (no edge-name parsing needed), and directed comes from x$x$directed.

Usage

splot.net_permutation(
  x,
  show_nonsig = FALSE,
  show_effect = FALSE,
  edge_positive_color = "#009900",
  edge_negative_color = "#C62828",
  edge_nonsig_color = "#888888",
  edge_nonsig_style = 2L,
  show_stars = TRUE,
  ...
)

Arguments

x	A net_permutation object (from Nestimate).
show_nonsig	Logical: show non-significant edges? Default FALSE.
show_effect	Logical: show effect size in parentheses? Default FALSE.
edge_positive_color	Color for positive differences. Default "#009900".
edge_negative_color	Color for negative differences. Default "#C62828".
edge_nonsig_color	Color for non-significant edges. Default "#888888".
edge_nonsig_style	Line style for non-significant edges. Default 2L.
show_stars	Logical: show significance stars? Default TRUE.
...	Additional arguments passed to splot().

Value

Invisibly returns the plot.

cograph documentation built on April 1, 2026, 1:07 a.m.