Files in combiroc

Selection and Ranking of Omics Biomarkers Combinations Made Easy

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

R/show_markers.R R/combi_score.R R/seurat_to_combiroc.R R/markers_distribution.R R/load_data.R R/demo_unclassified_data.R R/combs_with.R R/combi.R R/ranked_combs.R R/single_markers_statistics.R R/demo_data.R R/combiroc_long.R R/roc_reports.R R/examples/combiroc_long_example.R R/examples/demo_data_example.R R/examples/ranked_combs_example.R R/examples/demo_unclassified_data_example.R R/examples/combi_example.R R/examples/markers_distribution_example.R R/examples/combi_score_example.R R/examples/show_markers_example.R R/examples/load_data_example.R R/examples/roc_reports_example.R R/examples/combs_with_example.R R/examples/seurat_to_combiroc_example.R R/examples/single_markers_statistics_example.R

inst/doc/combiroc_vignette_2.html

inst/doc/combiroc_vignette_2.R inst/doc/combiroc_vignette_1.Rmd

inst/doc/combiroc_vignette_1.html

inst/doc/combiroc_vignette_1.R inst/doc/combiroc_vignette_2.Rmd

inst/www/combiroc.png

inst/external_code/signature_score.R

inst/precomp/reports_metrics.rds

inst/precomp/train_sub.rds

inst/precomp/train_tab_sub.rds

inst/precomp/rmks_table_sub.rds

inst/precomp/nk_degs

build/vignette.rds

tests/testthat.R tests/testthat/test-show_markers.R tests/testthat/setuptests_combiroc.R tests/testthat/test-markers_distribution.R tests/testthat/test-load_data.R tests/testthat/test-combiroc_long.R tests/testthat/test-single_markers_statistics.R tests/testthat/test-roc_reports.R tests/testthat/test-combi.R tests/testthat/test-combs_with.R tests/testthat/test-ranked_combs.R

vignettes/pbmc3k_NK_c137550_combiscore.png

vignettes/combiroc.png

vignettes/combiroc_vignette_1.Rmd

vignettes/cbmc_NK_c172173_sigscore.png

vignettes/pbmc3k_violin_randomcontrol.png

vignettes/atlas_dimplot.png

vignettes/cbmc_dimplot.png

vignettes/distr_dens_plot.png

vignettes/cbmc_violinplots_genes.png

vignettes/cbmc_NK_c172173_combiscore.png

vignettes/pbmc3k_dimplot.png

vignettes/cbmc_dimviolin_c172173.png

vignettes/roc_curve.png

vignettes/pbmc3k_dimviolin_c137550.png

vignettes/FeaturePlot1.png

vignettes/cbmc_violin_randomcontrol.png

vignettes/pbmc3k_violinplots_genes.png

vignettes/roc_curve_vign1.png

vignettes/pbmc3k_NK_c137550_sigscore.png

vignettes/combiroc_vignette_2.Rmd

vignettes/roc_curve_zoom.png

data/demo_data.rda

data/demo_unclassified_data.rda

man/combi_score.Rd man/combi.Rd man/single_markers_statistics.Rd man/demo_data.Rd man/load_data.Rd man/ranked_combs.Rd man/combiroc_long.Rd man/markers_distribution.Rd man/seurat_to_combiroc.Rd man/roc_reports.Rd man/combs_with.Rd man/demo_unclassified_data.Rd man/show_markers.Rd

man/figures/combiroc.png

combiroc documentation built on July 9, 2023, 5:56 p.m.