comclim: Community climate statistics.
Version 0.9.4

Computes community climate statistics for volume and mismatch using species' climate niches either unscaled or scaled relative to a regional species pool. These statistics can be used to describe biogeographic patterns and infer community assembly processes. Includes a vignette outlining usage.

AuthorBenjamin Blonder
Date of publication2014-09-19 10:31:53
MaintainerBenjamin Blonder <bblonder@gmail.com>
LicenseGPL-3
Version0.9.4
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("comclim")

Getting started

Package overview

Popular man pages

climatedeviations: Reports community climate deviations.
climatestatistics: Reports observed climate statistics
comclim-package: Community climate analysis
communityclimate: Community climate analysis
CommunityClimateStatistics-class: Class '"CommunityClimateStatistics"'
generatedemodata: Simulation data for demonstration analyses.
summary.CommunityClimateStatistics: Summarizes community climate statistics
See all...

All man pages Function index File listing

Man pages

climatedeviations: Reports community climate deviations.
climatestatistics: Reports observed climate statistics
comclim-package: Community climate analysis
communityclimate: Community climate analysis
CommunityClimateInput-class: Class '"CommunityClimateInput"'
CommunityClimateStatistics-class: Class '"CommunityClimateStatistics"'
generatedemodata: Simulation data for demonstration analyses.
inputcommunitydata: Input data for community climate analysis
plot.CommunityClimateInput: Pairs plot of species and regional pool in climate space
plot.CommunityClimateStatistics: Draws community climate diagram.
summary.CommunityClimateInput: Summarizes community climate input
summary.CommunityClimateStatistics: Summarizes community climate statistics

Functions

CommunityClimateInput-class Man page
CommunityClimateStatistics-class Man page
assigndeviations Source code
averagestatisticsacrossreplicates Source code
climatedeviations Man page Source code
climatemismatch Source code
climatestatistics Man page Source code
climatevolume Source code
comclim Man page
comclim-package Man page
communityclimate Man page Source code
computestatisticsfromsamples Source code
generatedemodata Man page Source code
getnichesforspecieslist Source code
inputcommunitydata Man page Source code
plot.CommunityClimateInput Man page Source code
plot.CommunityClimateStatistics Man page Source code
plotDeviation Source code
plotcircle Source code
plotdensity Source code
pvalue_twotailed Source code
reportdeviations Source code
samplepointsfromnicheofspecieslist Source code
summary.CommunityClimateInput Man page Source code
summary.CommunityClimateStatistics Man page Source code

Files

inst
inst/doc
inst/doc/comclim.R
inst/doc/comclim.pdf
inst/doc/comclim.Rnw
NAMESPACE
R
R/comclim.R
vignettes
vignettes/comclim.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/plot.CommunityClimateStatistics.Rd
man/communityclimate.Rd
man/comclim-package.Rd
man/plot.CommunityClimateInput.Rd
man/climatestatistics.Rd
man/inputcommunitydata.Rd
man/summary.CommunityClimateInput.Rd
man/generatedemodata.Rd
man/CommunityClimateStatistics-class.Rd
man/climatedeviations.Rd
man/summary.CommunityClimateStatistics.Rd
man/CommunityClimateInput-class.Rd
comclim documentation built on May 19, 2017, 5:08 p.m.