Man pages for convevol
Analysis of Convergent Evolution
| calcConv | Quantifies convergent evolution by the ratio of the current... |
| calcConvCt | Computes Ct-metric scores for putatively convergent tips (or... |
| calcCs | Calculates the C1-C4 measures of convergent evolution between... |
| calcCsCt | Computes Ct values for a pair of tips. Internal, called in... |
| convnum | Quantify convergence by the number of convergent events |
| convnumsig | Assess the significance of convergent evolution using... |
| convSig | Uses simulations to assess the significance of C1-C4 measures... |
| convSigCt | Computes and conducts significance tests on Ct-metric scores... |
| multianc | Reconstructs ancestral states for multiple characters |
| plotCt | Plots calcConv or convSig output. |
| plotellipse | Plots an ellipse |
| pullNodeSeq | Extracts a vector of ancestors for a given taxon. Code... |
