|allmaxdist||Calculates maxdist for all pairs of taxa in a phylogeny.|
|ancestrallineages||Extracts lineages leading to two tips, t1 and t2, from their...|
|calcchanges||Calculates all phenotypic changes that occur on all branches...|
|convnum||Quantify convergence by the number of convergent events|
|convnumsig||Assess the significance of convergent evolution using...|
|convrat||Quantifies convergent evolution using the C1, C2, C3, and C4...|
|convratsig||Tests the signifiance of convergent evolution by the ratio of...|
|findanc||Find the ancestor of a given node in a phylogeny|
|labelstonumbers||Converts taxon names to tip/edge numbers|
|maxdist||Calculates the maximum phenotypic distance between the...|
|multianc||Reconstructs ancestral states for multiple characters|
|plotellipse||Plots an ellipse|
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