multianc: Reconstructs ancestral states for multiple characters

Description Usage Arguments Details Value References Examples

View source: R/multianc.R

Description

Uses fastAnc to reconstruct ancestral states for multiple phenotypic characters

Usage

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multianc(phyl, phendata)

Arguments

phyl

The phylogeny of interest in phylo format

phendata

Phenotypic data for all tips

Details

None

Value

A matrix with the tips data in the first n rows and the ancestral data in the remaining n-1 rows.

References

Paradis, E., J. Claude, and K. Strimmer (2004) APE: Analyses of phylogenetics and evolution in R langauge. Bioinformatics, 20, 289-290.

Revell, L. J. (2012) phytools: An R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3 217-223.

Examples

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phyl<-rtree(10)

phendata<-fastBM(phyl,nsim=2)

ancs<-multianc(phyl,phendata)

convevol documentation built on May 2, 2019, 6:53 a.m.

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