Man pages for cooccur
Probabilistic Species Co-Occurrence Analysis in R
| beetles | Beetle occurrence data from (Ulrich and Zalewski 2006). |
| cooccur | A function to calculate pairwise co-occurrence patterns from... |
| cooccur-package | cooccur: Probabilistic Species Co-occurrence Analysis in R |
| coprob | Internal function, not intended for use by the user. |
| coprobbase | Internal function, not intended for use by the user. |
| create.N.matrix | Function to create spp x spp matrix of potential co-occurring... |
| effect.sizes | Function to extract species pairwise effect sizes from an... |
| finches | Finch occurrence data from (Sanderson 2000). |
| obs.v.exp | Function to plot a visualization of the observed versus... |
| pair | Function to examine co-occurrence patterns for an individual... |
| pair.attributes | Function to create a species-wise summary of co-occurrence... |
| pair.profile | Function to produce a visualization of species contributions... |
| plot.cooccur | Function for producing a heatmap co-occurrence visualization. |
| print.cooccur | Print significant pairwise species results. |
| prob.table | Function to extract the probability table from an analysis of... |
| rodents | Rodent occurrence data from (Brown and Kurzius 1987). |
| summary.cooccur | Method to summarize co-occurrence patterns. |
