pair: Function to examine co-occurrence patterns for an individual...

In cooccur: Probabilistic Species Co-Occurrence Analysis in R

Description

Extracts results for a single species from a cooccur object.

Usage

pair(mod, spp, all = FALSE)

Arguments

mod	Object of class cooccur.
spp	Name of the species, or the number assigned to it.
all	Logical. If TRUE then all, not just significant, results are returned.

Value

Same as prob.table() but for only one species.

Author(s)

Daniel M Griffith

See Also

prob.table

Examples

#data(finches)
#cooccur.finches <- cooccur(mat=finches,
#			   type="spp_site",
#			   thresh=TRUE,
#			   spp_names=TRUE)
#pair(cooccur.finches,"Geospiza fortis",all=TRUE)

cooccur documentation built on May 2, 2019, 6:44 a.m.