Files in cophescan

Adaptation of the Coloc Method for PheWAS

NEWS.md README.md R/RcppExports.R R/testdata.R R/multitrait.R R/cophescan-package.R R/singlevar.R R/copheplots.R R/zzz.R R/multivarsusie.R R/metrop_hier_priors.R R/cophe_hyp_predict.R inst/doc/InputData_02.Rmd inst/doc/FixedPriors_03.Rmd inst/doc/HierarchicalPriors_04.Rmd inst/doc/IntroductionCoPheScan_01.Rmd inst/doc/HierarchicalPriors_04.R inst/doc/FixedPriors_03.R inst/doc/InputData_02.R inst/doc/IntroductionCoPheScan_01.R tests/testthat.R tests/testthat/test-hier.R tests/testthat/test-likelihood_calculations.R vignettes/InputData_02.Rmd vignettes/FixedPriors_03.Rmd vignettes/HierarchicalPriors_04.Rmd vignettes/IntroductionCoPheScan_01.Rmd man/hypothesis.priors.Rd man/logpriors.Rd man/loglik.Rd man/metrop_run.Rd man/adjust_priors.Rd man/sample_beta.Rd man/cophe.bf_bf.Rd man/combine.bf.Rd man/average_piks_list.Rd man/cophe.susie.lbf.Rd man/average_posterior_prob_list.Rd man/logd_beta.Rd man/run_metrop_priors.Rd man/cophe_heatmap.Rd man/sample_gamma.Rd man/logd_gamma.Rd man/multitrait.simplify.Rd man/posterior_prob.Rd man/Hc.cutoff.fdr.Rd man/logd_alpha.Rd man/pars_init.Rd man/cophe.hyp.predict.Rd man/summary.cophe.Rd man/cophe_plot.Rd man/per.snp.priors.Rd man/cophe.prepare.dat.susie.Rd man/cophe.single.lbf.Rd man/average_posterior_prob.Rd man/cophe.single.Rd man/get_beta.Rd man/cophe.prepare.dat.single.Rd man/logsum.Rd man/average_piks.Rd man/cophescan-package.Rd man/plot_trait_manhat.Rd man/cophe.multitrait.Rd man/logsumexp.Rd man/cophe.susie.Rd man/sample_alpha.Rd man/prepare_plot_data.Rd man/target.Rd man/logpost.Rd man/pars2pik.Rd man/propose.Rd man/piks.Rd man/cophe_multi_trait_data.Rd man/get_posterior_prob.Rd