cophe.bf_bf: extract data through Bayes factors

In cophescan: Adaptation of the Coloc Method for PheWAS

extract data through Bayes factors

Description

a dataset represented by Bayes factors from SuSIE

Usage

cophe.bf_bf(
  sus_dat,
  cred_set,
  querysnpid,
  querytrait,
  pn = NULL,
  pa = NULL,
  pc = NULL,
  ret_pp = TRUE
)

Arguments

sus_dat	a list with the output of running susie
cred_set	credible set extracted from susie
querysnpid	Id of the query variant
querytrait	Query trait name
pn	prior probability that none of the SNPs/variants in the region are associated with the query trait
pa	prior probability that a non-query variant is causally associated with the query trait
pc	prior probability that the query variant is causally associated with the query trait

Value

bayes factors of signals

See Also

cophe.susie

cophescan documentation built on June 22, 2024, 9:15 a.m.