cophe_heatmap: Heatmap of multi-trait cophescan results

In cophescan: Adaptation of the Coloc Method for PheWAS

Heatmap of multi-trait cophescan results

Description

Heatmap of multi-trait cophescan results

Usage

cophe_heatmap(
  multi.dat,
  querysnpid,
  query_trait_names,
  thresh_Hc = 0.5,
  thresh_Ha = 0.5,
  ...
)

Arguments

multi.dat	multi trait cophescan results returned from cophe.multitrait or formatted in the same way with multitrait.simplify
querysnpid	query variant
query_trait_names	names of phenotypes corresponding to the multi.dat results
thresh_Hc	Hc threshold to be displayed
thresh_Ha	Ha threshold to be displayed
...	additional arguments to be passed to pheatmap

Value

heatmap of posterior probabilities of the phentypes above the set threshold

cophescan documentation built on June 22, 2024, 9:15 a.m.