primates: Example datasets

In corHMM: Hidden Markov Models of Character Evolution

Example datasets

Description

Example files for running various functions in corHMM. The “primates” dataset comes from the example files provided by BayesTraits, though here we only include a single tree with branch lengths scaled to time. The “primates.paint” dataset is the same, but with the tree painted according to hypothetical regimes. Finally, the “rayDISC.example” dataset provides an example on how polymorphic data can be coded for rayDISC.

Format

a list object that contains a tree of class “phylo” and a dataframe that contains the trait data

References

Pagel, M., and A. Meade. 2006. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. American Naturalist 167:808-825.

corHMM documentation built on June 14, 2022, 1:05 a.m.