coreTDT: TDT for compound heterozygous and recessive models
Version 1.0

Use to analysis case-parent trio sequencing studies. Test the compound heterozygous and recessive disease models

Browse man pages Browse package API and functions Browse package files

AuthorYu Jiang, Andrew S Allen
Date of publication2014-09-03 07:20:55
MaintainerYu Jiang<yu.jiang@dm.duke.edu>
LicenseGPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("coreTDT")

Man pages

compHet_TDT_v6: compute p value for coreTDT
coreTDTexample: Example data for coreTDT
coreTDT_geneset: Transimission Disequilibrium Test for compound heterozygous...
coreTDT.results.2.df: convert coreTDT class to dataframe
FamilyPhase: Phasing trios
pvalue_calculator: compute p value for exact coreTDT

Functions

FamilyPhase Man page Source code
FamilyPhaseII Man page Source code
FamilyPhaseIII Man page Source code
PairPhase Man page Source code
compHet_TDT_v6 Man page Source code
coreTDT.results.2.df Man page Source code
coreTDT_geneset Man page Source code
coreTDT_single Man page Source code
coreTDTexample Man page
loglr_comp Man page Source code
loglr_comp_2side Man page Source code
pvalue_calculator Man page Source code

Files

NAMESPACE
data
data/coreTDTexample.RData
R
R/pvalue_calculator.R
R/phasing_codes_3_25_2014.R
R/coreTDT_geneset.R
R/compHet_TDT_single.R
R/coreTDT_single.R
MD5
DESCRIPTION
man
man/FamilyPhase.Rd
man/pvalue_calculator.Rd
man/coreTDT.results.2.df.Rd
man/coreTDT_geneset.Rd
man/coreTDTexample.Rd
man/compHet_TDT_v6.Rd
coreTDT documentation built on May 19, 2017, 11:20 a.m.