coreTDT: TDT for compound heterozygous and recessive models

Use to analysis case-parent trio sequencing studies. Test the compound heterozygous and recessive disease models

Author
Yu Jiang, Andrew S Allen
Date of publication
2014-09-03 07:20:55
Maintainer
Yu Jiang<yu.jiang@dm.duke.edu>
License
GPL-3
Version
1.0

View on CRAN

Man pages

compHet_TDT_v6
compute p value for coreTDT
coreTDTexample
Example data for coreTDT
coreTDT_geneset
Transimission Disequilibrium Test for compound heterozygous...
coreTDT.results.2.df
convert coreTDT class to dataframe
FamilyPhase
Phasing trios
pvalue_calculator
compute p value for exact coreTDT

Files in this package

coreTDT
coreTDT/NAMESPACE
coreTDT/data
coreTDT/data/coreTDTexample.RData
coreTDT/R
coreTDT/R/pvalue_calculator.R
coreTDT/R/phasing_codes_3_25_2014.R
coreTDT/R/coreTDT_geneset.R
coreTDT/R/compHet_TDT_single.R
coreTDT/R/coreTDT_single.R
coreTDT/MD5
coreTDT/DESCRIPTION
coreTDT/man
coreTDT/man/FamilyPhase.Rd
coreTDT/man/pvalue_calculator.Rd
coreTDT/man/coreTDT.results.2.df.Rd
coreTDT/man/coreTDT_geneset.Rd
coreTDT/man/coreTDTexample.Rd
coreTDT/man/compHet_TDT_v6.Rd