pvalue_calculator: compute p value for exact coreTDT
In coreTDT: TDT for compound heterozygous and recessive models

Description Usage Arguments Value

View source: R/pvalue_calculator.R

compute all kinds of p values for exact coreTDT

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pvalue_calculator(y1, y2, n1, n2, theta1 = 0.25, theta2 = 0.5)
loglr_comp(x1, x2, n1, n2, theta1 = 0.25, theta2 = 0.5)
loglr_comp_2side(x1, x2, n1, n2, theta1 = 0.25, theta2 = 0.5)

`y1`	integer, N112
`y2`	integer, N122
`n1`	integer, N11
`n2`	integer, N12
`theta1`	float, probaliblity of N112 given N11
`theta2`	float, probaliblity of N122 given N12
`x1`	integer, N112
`x2`	integer, N122

`pvalue_pr`	pvalues computed from probabaility model
`pvalue_lr`	pvalues from likelihood ratio test with restricted alternative hypothesis
`pvalue_lr2`	pvalues from likelihood ratio test